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2019genomicsepidemiologyworkshop

2019 Genomics Epidemiology Workshop at Academia Sinica

abalign

A visualization software for antibody multi sequence alignment

ablang

AbLang: A language model for antibodies

ablooper

Tool for modelling the CDRs of antibodies

acid

Auto in silico Consensus Inverse Docking(ACID) is a web server mainly for drug repurposing based on the consensus inverse docking method, which is designed to evaluate the binding affinities between each protein and the given small molecule. ACID is open to the public and shows great potential.

adapterremoval

AdapterRemoval v2 - rapid adapter trimming, identification, and read merging

akt

Ancestry and Kinship Tools

alea

ALEA: a toolbox for allele-specific epigenomics analysis

alphafold

Open source code for AlphaFold.

anarci

Antibody Numbering and Antigen Receptor ClassIfication

antibody-design

Modeling antibody design based on antibody and antigen information. Will also look at other existing methods for modeling antibodies.

antibody_developability

asap_reproducibility

Reproducing all analyses and figures for the ASAP-seq paper

ascat

ASCAT copy number R package

aspera-cli

IBM Aspera CLI

atac-seq

Basic workflow for ATAC-seq analysis

atac_iterativeoverlappeakmerging

atacseq

Analysis Workflow for Assay for Transposase-Accessible Chromatin using sequencing (ATAC-Seq)

augur

Pipeline components for real-time phylodynamic analysis

autopvs1

An automatic classification tool for PVS1 interpretation of null variants

awesome-atac-analysis

Links to ATAC-seq analysis tools

awesome-crispr

List of software/websites/databases/other stuff for genome engineering

awesome-cryoem

A collaborative list of awesome CryoEM (Cryo Electron Microscopy) resources.

awosome-bioinformatics

A curated list of resources for learning bioinformatics.

bagel

BAGEL software

balsamic

Bioinformatic Analysis pipeLine for SomAtic Mutations In Cancer

bcbio-nextgen

Validated, scalable, community developed variant calling, RNA-seq and small RNA analysis

bcbiornaseq

R package for bcbio RNA-seq analysis.

bed_annotation

Assign gene names to regions in a BED file

bf545_atac-seq_lab

ATAC-seq lab for BIOINF545