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scmlnet

scmut

scomap

ScoMAP is an R package to spatially integrate single-cell omics data into virtual cells and infer enhancer-to-gene relationships.

scrna-seq_online

scrna.seq.course

Analysis of single cell RNA-seq data course

sctenifoldknk

R/MATLAB package to perform virtual knockout experiments on single-cell gene regulatory networks.

sctenifoldpy

A python package implements scTenifoldnet and scTenifoldknk

scvelo

RNA Velocity generalized through dynamical modeling

scwgcna

scWGCNA

sentieon-scripts

Helper scripts for biological data processing from Sentieon

seqkit

Toolkit for manipulating FASTA and SAM files

seurat

R toolkit for single cell genomics

seurat-to-rna-velocity

A guide to using a Seurat object in conjunction with RNA Velocity

single_cell_lung_adenocarcinoma

singlecell-heatmap

Config files for my GitHub profile.

snp_primer_pipeline

speciesprimer

The SpeciesPrimer pipeline is intended to help researchers finding specific primer pairs for the detection and quantification of bacterial species in complex ecosystems.

squeezemeta

A complete pipeline for metagenomic analysis

ssipe

Estimation of binding affinity change upon mutations at protein-protein interface

stampscreen

An Integrated Pipeline for Mammalian Genetic Screening

strtprep

STRTprep - automated preprocessing of STRT RNA-seq data and for the analysis

superenhancer_pipeline

A pipeline to locate super-enhancer regions

tcgadnloader

TCGA hg19 and hg38 data downloader.

thermoalign

ThermoAlign: software for automated primer design

tobias

Transcription factor Occupancy prediction By Investigation of ATAC-seq Signal

ucscxenashiny

📊 An R package for interactively exploring UCSC Xena https://xenabrowser.net/datapages/

uniqprimer

uropa

Universal RObust Peak Annotator

varcode

Library for manipulating genomic variants and predicting their effects

variants2neoantigen

a neoantigen calling pipeline begins from variants record file (MAF)