Comments (1)
lindenb
commented on August 15, 2024
the problem is
GO_INPUT=http://geneontology.org/gene-associations/gene_association.fb.gz
it's not a GO URL but a GOA url. GO_INPUT expects a RDF+XML.gz URL like
http://archive.geneontology.org/latest-termdb/go_daily-termdb.rdf-xml.gz
Anyway, I've changed the code for this tool today. https://github.com/lindenb/jvarkit/wiki/VCFGeneOntology You should use it instead of the old version.
P.
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Related Issues (20)
- Error while installing -- Running Javac HOT 2
- strange biostar214299 results HOT 2
- vcf2tab HOT 2
- Randomized runs of Biostar154220.html HOT 1
- Test AssertionError HOT 2
- build failed and test failed
- Task :vcffilterjdk FAILED HOT 1
- ./gradlew mapuniprot install error HOT 3
- Is it possible to add the 'Gene' and peptide 'POSITION(S)' info corresponding to each genomic coordinate using MapUniProtFeatures HOT 5
- Task 'MapUniProtFeatures.main()' not found in root project 'jvarkit'. HOT 2
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- build failed，are these packages core packages or important packages and will they affect other toolkits? HOT 2
- java.lang.StackOverflowError [Biostar175929] HOT 2
- vcf2svg
- bamrenamechr [SEVERE][ConvertBamChromosomes]Illegal state mapper==null or dict-out=null HOT 5
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- Backlocate w/ E. coli genome HOT 3
- Biostar404363 – unequal AF instead of ambiguity code HOT 6
- Biostar139647 : documentation issues HOT 2
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