Comments (5)
Hi,
how about using bedtools intersect
?
from jvarkit.
Thank you for your prompt reply.
Using bedtools intersect may only get gene info for each genomic coordinate ,when I using WES bed as input .
But I cannot get the peptide positions .
My WES bed looks like as :
chr1 69090 69240 target1 OR4F5:exon1
chr1 69240 69390 target2 OR4F5:exon1
chr1 69390 69540 target3 OR4F5:exon1
chr1 69540 69690 target4 OR4F5:exon1
chr1 69690 69840 target5 OR4F5:exon1
chr1 69840 69990 target6 OR4F5:exon1
chr1 69990 70008 target7 OR4F5:exon1
from jvarkit.
Actually ,I want to add the genomic coordinates to each protein domain
from jvarkit.
Sorry, I won't have the time to work on this.
from jvarkit.
it doesn't matter,thank you very much for your prompt reply.
from jvarkit.
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