Is it possible to add the 'Gene' and peptide 'POSITION(S)' info corresponding to each genomic coordinate using MapUniProtFeatures

[wunalahu2]

Is it possible to add the 'Gene' and peptide 'POSITION(S)' info corresponding to each genomic coordinate using MapUniProtFeatures

[lindenb]

Hi,
how about using bedtools intersect ?

[wunalahu2]

Thank you for your prompt reply.
Using bedtools intersect may only get gene info for each genomic coordinate ,when I using WES bed as input .
But I cannot get the peptide positions .
My WES bed looks like as :
chr1 69090 69240 target1 OR4F5:exon1
chr1 69240 69390 target2 OR4F5:exon1
chr1 69390 69540 target3 OR4F5:exon1
chr1 69540 69690 target4 OR4F5:exon1
chr1 69690 69840 target5 OR4F5:exon1
chr1 69840 69990 target6 OR4F5:exon1
chr1 69990 70008 target7 OR4F5:exon1

[wunalahu2]

Actually ,I want to add the genomic coordinates to each protein domain

[lindenb]

Sorry, I won't have the time to work on this.

[wunalahu2]

it doesn't matter，thank you very much for your prompt reply.