looselab Goto Github PK

alignwise

barcode_paper_nb

Companion repo for https://www.biorxiv.org/content/10.1101/2021.12.01.470722v1

bulkvis

bwapy

Python bindings to bwa mem

file_creation_simulator

Move fastq files from given dir to dir

flowcellvis

Animated GIF of flow cell performance from sequencing summary file.

icarust

A fully featured MinKNOW simulator for testing read until experiments.

icarust_docker

A stand alone docker based setup for Icarust, the readfish simulation software.

icarust_supplementary_data

Supplementary data for the corrsponding Icarust paper. See README.md for layout of files.

iterassemble

An iterative assembler for exploiting transcripts and whole genome reads from hard to assemble genomes.

looselab.github.io

minotour

Real time data analysis tools for the minION sequencing platform.

minotour-docker

Test for minotour docker compose test

minotourapp

Minotour API, web and client code

minotourcli

na12878

Data and analysis for NA12878 genome on nanopore

ont_artic_summaries

simple script to parse sequencing summary files to extract useful information and stats.

ont_minimap2

pgc_dnds

Data and methods for 'Defending the PGC Specification Hypothesis'

pomoxis

Fast, concurrent and real-time analysis components from Oxford Nanopore Research

porechop

adapter trimmer for Oxford Nanopore reads

read_until_api

Read Until client library for Nanopore Sequencing

read_until_api_v2

Python3 Read Until API implementation

readfish

CLI tool for flexible and fast adaptive sampling on ONT sequencers

readfish-tools

Utility command line tools for helping run readfish

rftools

Tools for post processing readfish data

sturgeon

Sturgeon is a CNS neural network classifier

swordfish

test_data

a small test data set

ww_nf_minimal

A minimal NXF workflow for analysing consortium wastewater data