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file_creation_simulator's Introduction

File creation simulator

Command line client for copying FASTA or FASTQ files from their current source directory to a given destination directory using their latest read start time as a proxy for the file creation time. The files are then copied at the correct intervals as per their latest read start times. Config.yaml currently lists the example directories as source and destination directories.

Installation

git clone https://github.com/LooseLab/file_creation_simulator
python -m venv file_creation_simulator
pip install -r requirements.txt

Example commands

  • Show help text and exit

    python main.py -h
  • Run with config file

    python main.py -c config.yaml  
  • Run without config file

    python main.py -sd <path/to/src/directory> -dd <path/to/destination/directory

file_creation_simulator's People

Contributors

adoni5 avatar mattloose avatar

Watchers

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