Giter Site home page Giter Site logo

ont_minimap2's Introduction

ont_minimap2

Oxford Nanopore Technologies wrapper for minimap2

This project uses cmake to build

  • the original minimap2 executable
  • a shared (dynamic-link) library with core alignment functions that is called by ONT software

The project is provided under the Terms and Conditions of the Nanopore Community. These are available on the Oxford Nanopore Technologies website (https://nanoporetech.com).

This project is shipped with a pre-built version of pthreads-win32 from https://sourceforge.net/projects/pthreads4w/. to support pthread functionality also under Windows. This software is released under LGPL, see https://sourceforge.net/p/pthreads4w/code/ci/master/tree/COPYING.

Prerequisites

  • All platforms: cmake and the platform's standard compiler (either gcc, clang or MSVC)
  • Windows: Intel Compiler Collection (icc). Current minimap2 might also compile with Microsoft Visual Studio, but we have not tested this.

Quick Start

mkdir build; cd build
cmake ..
cmake --build .

ont_minimap2's People

Contributors

mattloose avatar swvondeylen-ont avatar

Watchers

Roberto Santos avatar James Cloos avatar avatar

Forkers

teepean mikblack jensuweulrich lutfia95

Recommend Projects

  • React photo React

    A declarative, efficient, and flexible JavaScript library for building user interfaces.

  • Vue.js photo Vue.js

    🖖 Vue.js is a progressive, incrementally-adoptable JavaScript framework for building UI on the web.

  • Typescript photo Typescript

    TypeScript is a superset of JavaScript that compiles to clean JavaScript output.

  • TensorFlow photo TensorFlow

    An Open Source Machine Learning Framework for Everyone

  • Django photo Django

    The Web framework for perfectionists with deadlines.

  • D3 photo D3

    Bring data to life with SVG, Canvas and HTML. 📊📈🎉

Recommend Topics

  • javascript

    JavaScript (JS) is a lightweight interpreted programming language with first-class functions.

  • web

    Some thing interesting about web. New door for the world.

  • server

    A server is a program made to process requests and deliver data to clients.

  • Machine learning

    Machine learning is a way of modeling and interpreting data that allows a piece of software to respond intelligently.

  • Game

    Some thing interesting about game, make everyone happy.

Recommend Org

  • Facebook photo Facebook

    We are working to build community through open source technology. NB: members must have two-factor auth.

  • Microsoft photo Microsoft

    Open source projects and samples from Microsoft.

  • Google photo Google

    Google ❤️ Open Source for everyone.

  • D3 photo D3

    Data-Driven Documents codes.