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bidskit's Introduction

BIDSKIT 1.2.3

Python utilities for converting from DICOM to BIDS neuroimaging formats.

The bidskit console command takes a directory tree containing imaging series from one or more subjects (eg T1w MPRAGE, BOLD EPI, Fieldmaps), converts the imaging data to Nifti-1 format with JSON metadata files (sidecars) and populates a Brain Imaging Data Structure (BIDS) which should pass the online BIDS validation tool (http://incf.github.io/bids-validator).

The version numbering for bidskit follows that of the BIDS specification it implements. At the time of writing, BIDS and bidskit are at version 1.2.

Documentation

Installation Instructions

Quick Start Guide

Bugs and Feature Requests

Let us know about bugs and feature requests through this repo's GitHub Issues page.

Related Projects

  • heudiconv General purpose heuristic DICOM converter
  • dcm2bids Christophe Beddetti's DICOM to BIDS converter

bidskit's People

Contributors

jmtyszka avatar nair-r avatar argyelan avatar celstark avatar jcrdubois avatar rhancockn avatar danweflen avatar johncholewa avatar

Watchers

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