STABLE branch

[mojaveazure]

STABLE branch

[mojaveazure]

@liux1299 and I would like to keep working until Sunday night; we'll create the stable and dev branches then.

[rossibarra]

OK

---

Jeffrey Ross-Ibarra

Dept. of Plant Sciences
262 Robbins Hall, Mail Stop 4
University of California
One Shields Ave
Davis, CA 95616

Tel: [phone]
@jrossibarra
www.rilab.org

On Fri, Jan 22, 2016 at 2:44 PM, Paul Hoffman [email protected]
wrote:

@liux1299 https://github.com/liux1299 and I would like to keep working
until Sunday night; we'll create the stable and dev branches then.

—
Reply to this email directly or view it on GitHub
#28 (comment)
.

[rossibarra]

No attachment? I can try that this weekend if I have time.

[ChaochihL]

Sorry about that. Here is the attachement:

I've already incorporated the filtering from your merge.R script. The
splash screen of Shiny Fst tab is the Fst file generated from Maize example
data.

Does this look right?

[rossibarra]

Looks great. I like the zoom approach. Are we filtering invariant sites in
the thetas display too? (we should)

-Jeff

---

Jeffrey Ross-Ibarra

Dept. of Plant Sciences
262 Robbins Hall, Mail Stop 4
University of California
One Shields Ave
Davis, CA 95616

Tel: [phone]
@jrossibarra
www.rilab.org

On Fri, Jan 22, 2016 at 3:12 PM, ChaochihLiu [email protected]
wrote:

Sorry about that. Here is the attachement:

[image: screen shot 2016-01-22 at 5 08 35 pm]
https://cloud.githubusercontent.com/assets/7061412/12525643/5b35a56e-c12b-11e5-9f26-f29143cec6ab.png

I've already incorporated the filtering from your merge.R script. The
splash screen of Shiny Fst tab is the Fst file generated from Maize example
data.

Does this look right?

—
Reply to this email directly or view it on GitHub
#28 (comment)
.

[ChaochihL]

Jeff, I've added an Rscript to filter out invariant sites in the thetas plot. I have the script filtering out Tajimas values = 0 but kept both positive and negative Tajimas values. Let me know if that will work.

[rossibarra]

Hi Chaochih,

Nope, that's the wrong way to go. If pi=watterson's theta D=0 even if both
diversity estimates are >0. Just filter out anything with theta_w =0 and
you should be good.

-Jeff

---

Jeffrey Ross-Ibarra

Dept. of Plant Sciences
262 Robbins Hall, Mail Stop 4
University of California
One Shields Ave
Davis, CA 95616

Tel: [phone]
@jrossibarra
www.rilab.org

On Sun, Jan 24, 2016 at 4:43 PM, ChaochihLiu [email protected]
wrote:

Jeff, I've added an Rscript to filter out invariant sites in the thetas
plot. I have the script filtering out Tajimas values = 0 but kept both
positive and negative Tajimas values. Let me know if that will work.

—
Reply to this email directly or view it on GitHub
#28 (comment)
.

[ChaochihL]

Thanks for the correction, I will change that in the script. Other than that, everything else should be ready to go. Paul will freeze the working version tonight.

[mojaveazure]

Stable release created, the dev branch is where development will predominately occur.