mponce0/covid19.analytics

R package to obtain and analyze live data from the nCOVID19 coronavirus

covid19.analytics's Issues

growth.rate() bug

The function growth.rate() had a subtle bug which was making the function crash in some cases.
The bug is fixed in the development version of the package, which can be installed using

devtools::install_github("mponce0/covid19.analytics")

The fix will be also included in the next release to CRAN.

covid19.data Does Not Execute in AWS EC2

Is there a library dependency that prevents package executables from existing in AWS EC2? All dependent packages are loaded but data does not update. I am guessing a Linux library dependency is missing in the package documentation.

The acumulate deads for some contries are wrong

Do this, for example

data <- covid19.data("ts-deaths")

x <- data[data$Country.Region == "Germany", ]
y <- as.numeric(x[-(1:4)])
plot(y, type = "l")

Do you see the problem?

If not, try looking at this particular "aggregate number of deads" in these dates:

2020-04-10 2020-04-11
2767 > (cant be) 2736

This also happends for India, and I do not know if for other countries.

Regards,
CE

obviously this is not correct.

covid19.data case = "aggregated" data issue

Running:
covid_data_agg_wide <- covid19.data(case = "aggregated", local.data = FALSE, debrief = FALSE)
results in a mistake illustrated by this record The US Recovered data is returned:

FIPS: NA
Province_State: Recovered
Country_Region: US
2020-08-10 04:34:55
Recovered: 1656864
Active: -2458499
Combined_Key: Recovered, US

Metadata Update

Hello,
Your dataset was added to CoronaWhy (https://www.coronawhy.org/) Data Lake on Dataverse as a piece of common COVID-19 data frame http://datasets.coronawhy.org/dataset.xhtml?persistentId=doi:10.5072/FK2/MYQFTR
Would you be willing to help with the maintenance of your dataset in Dataverse, e.g. adding the relevant metadata and keeping the dataset up-to-date? That will help to make the dataset findable and accessible for the medical science community.

install error on oracle rstudio server xml load

Hi, I have setup an Oracle RStudio Server yesterday to have this covid19.analytics package accessible anywhere anytime on web.
Sadly, other such as EpiEstim and other packages installed smoothly but failed multiple times in your package with the following error.

• installing source package ‘covid19.analytics’ ...
  ** package ‘covid19.analytics’ successfully unpacked and MD5 sums checked
  ** using staged installation
  ** R
  ** inst
  ** byte-compile and prepare package for lazy loading
  Error: .onLoad failed in loadNamespace() for 'XML', details:
  call: dyn.load(file, DLLpath = DLLpath, ...)
  error: unable to load shared object '/usr/local/lib/R/site-library/XML/libs/XML.so':
  libxml2.so.2: cannot open shared object file: No such file or directory
  Execution halted
  ERROR: lazy loading failed for package ‘covid19.analytics’
• removing ‘/usr/local/lib/R/site-library/covid19.analytics’
  Warning in install.packages :
  installation of package ‘covid19.analytics’ had non-zero exit status

Please advise how to solve.
Thank you very much.

plot.SIR.model

I cannot seem to use the plot.SIR.model function. R could not find the function. Everything seems to be working well except for that function. Am I missing something here or is it part of the experimental aspects of the package?

Africa region not displaying in totals.plt and dashboard plots

Reported by a user:

Africa was not appearing in the pulldown menu selection of continents in the covid19Explorer dashboard