Comments (3)
I get the same error.
Were you able to sort this?
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I am getting the same
from vcf2maf.
You need to provide a path to a reference genome FASTA. By default, it points to $HOME/.vep/homo_sapiens/102_GRCh37/Homo_sapiens.GRCh37.dna.toplevel.fa.gz
which is what you would have if you followed the instructions to install VEP and download the cache and reference genome.
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Related Issues (20)
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