nbisweden Goto Github PK

ds-wizard

Data Stewardship Wizard for the questions from DS Knowledge Model

dsw-tdk

Data Stewardship Wizard Template Development Kit

ductape

ductape wraps workflows

earth-biogenome-project-pilot

Assembly and Annotation workflows for analysing data in the Earth Biogenome Project pilot project.

easyshiny

Shiny web app builder for single-cell data

ebi-metagenomics-cwl

This repository contains the CWL description of the EBI Metagenomics pipeline

efasta2fasta

Convert extended fasta (efasta) to fasta

ega-se-user-docs

Repository with all the information and documents for the the users of ega-se

emblmygff3

An efficient way to convert gff3 annotation files into EMBL format ready to submit.

ena-metadata-forms

Javascript forms to generate XML files for submissions to ENA

ena-submission

Tool for easing the submission of data to the ENA

ena-upload-cli

ENA upload tool - script your Open Data upload to the European Nucleotide Archive

encam

Encyclopedia of Cancer Microenvironment

excelerate-demonstrator-4.3

Elixir Excelerate Demonstrator 4.3

excelerate-scrnaseq

Single RNA-seq data analysis with R (Finland, May, 2019)

fastp-cleaning-6439

Snakemake workflow for NBIS SMS 6439

fega-sweden-helpdesk-acceptance-testing

Keeping track of acceptance testing done by FEGA Sweden's Helpdesk team

fega-sweden-helpdesk-generate-files

A Snakelike workflow to generate unique FASTQ files

fingerprintscan

Search against FingerPRINTScan with a protein query sequence to identify the closest matching PRINTS sequence motif fingerprints in a protein sequence.

fungal-trans

A Snakemake workflow for fungal metatranscriptomics

gaas

Genome Assembly and Annotation Service code

gc-bp-helm

Helm chart for grand challenge

gdi.nbis.se

genecovr

Gene body coverage in assemblies in R

generode

GitHub repository for GenErode, a Snakemake pipeline for the analysis of whole-genome sequencing data from historical and modern samples to study patterns of genome erosion.

golang-github-actions

Static code analysis checker for golang 🐙

grapevine

A natural language based workflow management system

grocsvs

Genome-wide reconstruction of complex structural variants

grsworkflow

Repository for development of workflow for use case 1.1

guessmylt

An efficient way to guess the library type of your RNA-Seq data.