Comments (1)
Hi, sorry for the late reply β I was on vacation.
I donβt see an actual error message in the log that you posted, so I cannot diagnose the problem. Can you copy a little bit more of the log output? You can run igdiscover run
in the same directory, and IgDiscover will try to re-run the last failed command. You could just copy the entire output from that command.
Alternatively, you could manually run the IgBLAST command like so:
igdiscover igblast --sequence-type=Ig --threads=1 --stats=iteration-01/stats/assigned.json iteration-01/database reads/sequences.fasta.gz > /dev/null
That should directly give you the relevant error message.
from igdiscover-legacy.
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