IgDiscover crashes with pandas 2.0.0

[ressy]

IgDiscover crashes with pandas 2.0.0

[marcelm]

Oh wow, I had no idea conda had yielded to mamba to that extent. Thanks!

I think the intention by the Mamba folks was from the beginning to get the fast solver back into Conda. Good to see it happening.

Also pretty sure it's seaborn's problem here. I'm not familiar with seaborn but for what it's worth this crashes with pandas 2.0.0 but works with 1.5.3:
[...]

Ah, thanks for the reproducer. I’ll see whether I can get IgDiscover to use the most recent seaborn version. I saw some commits regarding pandas 2 compatibility.

[marcelm]

Thanks a lot for reporting! I have opened bioconda/bioconda-recipes#40289 for the time being until I have time to investigate this further.

[marcelm]

BTW, you can now set Conda to use the Mamba solver with these commands:

conda install -n base conda-libmamba-solver
conda config --set solver libmamba

(I hope they make it the default soon.)

[ressy]

Oh wow, I had no idea conda had yielded to mamba to that extent. Thanks!

Also pretty sure it's seaborn's problem here. I'm not familiar with seaborn but for what it's worth this crashes with pandas 2.0.0 but works with 1.5.3:

import seaborn
import pandas
table = pandas.DataFrame(data = {
    "x": ["A", "A", "A", "B", "B", "B"],
    "y": [5, 7, 6, 2, 3, 2.5]})
seaborn.boxenplot(data=table, x="x", y="y")

[marcelm]

The Bioconda package is now updated and I also changed the Conda lock file to use Pandas 2.0.0, thanks again for reporting.