Comments (5)
Oh wow, I had no idea conda had yielded to mamba to that extent. Thanks!
I think the intention by the Mamba folks was from the beginning to get the fast solver back into Conda. Good to see it happening.
Also pretty sure it's seaborn's problem here. I'm not familiar with seaborn but for what it's worth this crashes with pandas 2.0.0 but works with 1.5.3:
[...]
Ah, thanks for the reproducer. I’ll see whether I can get IgDiscover to use the most recent seaborn version. I saw some commits regarding pandas 2 compatibility.
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Thanks a lot for reporting! I have opened bioconda/bioconda-recipes#40289 for the time being until I have time to investigate this further.
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BTW, you can now set Conda to use the Mamba solver with these commands:
conda install -n base conda-libmamba-solver
conda config --set solver libmamba
(I hope they make it the default soon.)
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Oh wow, I had no idea conda had yielded to mamba to that extent. Thanks!
Also pretty sure it's seaborn's problem here. I'm not familiar with seaborn but for what it's worth this crashes with pandas 2.0.0 but works with 1.5.3:
import seaborn
import pandas
table = pandas.DataFrame(data = {
"x": ["A", "A", "A", "B", "B", "B"],
"y": [5, 7, 6, 2, 3, 2.5]})
seaborn.boxenplot(data=table, x="x", y="y")
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The Bioconda package is now updated and I also changed the Conda lock file to use Pandas 2.0.0, thanks again for reporting.
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Related Issues (20)
- Parse Flash stats fails HOT 3
- Error: No V genes were discovered in this iteration HOT 11
- Docs may need updating for J discovery HOT 2
- Where is the complete germline DataBase? HOT 1
- Error in rule read_length_histogram HOT 3
- Snakemake workflow problem with symlinks and temp() HOT 4
- Give sensible error message when running init without DISPLAY
- snakemake error HOT 12
- IgDiscover crashes if no arguments are given HOT 1
- Error running against the test data set HOT 3
- IgBlast error HOT 1
- length of CDR1 region is not divisible by three HOT 3
- Complain if the input reads contain non-nucleotide characters/spaces HOT 10
- error about Microsoft Visual C++ on installation HOT 1
- Solving environment: failed HOT 2
- Cannot install IgDiscover on M1 MacBook Pro HOT 3
- error in_rule_read_length_histogram HOT 11
- trouble installing with conda HOT 2
- New IgDiscover repository
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