nbmanning/ibeem-collaborative-coding

source code for the IBEEM-sponsored workshop "Collaborative Coding for Scientific Research: Git, GitHub, and open science"

Workshop materials for Collaborative Coding for Scientific Research: Git, GitHub, and open science

This (will be) course materials for a workshop to be held at Michigan State University, sponsored by the MSU Institute for Biodiversity, Ecology, Evolution, and Macrosystems (https://ibeem.msu.edu)

About

These are the source files for the materials, to see the materials, go to the rendered book on github pages (URL pending).

Development

The book is coded based on R Markdown and bookdown (https://github.com/rstudio/bookdown). For more about bookdown package, see the page "Get Started" at https://bookdown.org/yihui/bookdown/

To install the packages needed, use renv

After cloning/downloading these files, in R use

install.packages('renv')
renv::init()

To preview the web-version of book use

bookdown::serve_book()

You may generate a copy of the book in bookdown::pdf_book format by calling bookdown::render_book('index.Rmd', 'bookdown::pdf_book'). More detailed instructions for using bookdown are in the bookdown book https://bookdown.org/yihui/bookdown/build-the-book.html.

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This work is licensed under Attribution-ShareAlike 4.0 International