Comments (3)
HadrienG
commented on May 28, 2024
5
Progress Update: I now have a template branch, but I didn't feel like resolving all the merge conflicts on Friday evening. Will see how it goes on Monday!
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HadrienG
commented on May 28, 2024
1
Thanks for the heads up! quite busy until Thursday (I have my halftime seminar), I'll take care of that on Friday
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sven1103
commented on May 28, 2024
1
no worries, I just wanted to add the issues for this everywhere, so I do not forget to do it :D
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Related Issues (20)
- Add StrainXpress assembler
- Supplying a directory to --gtdbk-db breaks GTDB-Tk HOT 1
- Add coverm/contig and coverm/genome as options for calculating read alignment metrics
- Expanded documentation for nf-core/mag use cases & downstream analysis
- Add documentation detailing phageome/virome analysis
- Pipeline fails if only CONCOCT is turned on and other binners off
- CONCOCT (slow) HOT 1
- Single end data input
- Problem with DUMPSOFTWAREVERSIONS HOT 2
- Centrifuge error - (ERR): mkfifo(/tmp/46.inpipe1) failed. HOT 3
- NFCORE_MAG:MAG:GTDBTK:GTDBTK_CLASSIFYWF fails when all genomes classified by ANI screening step HOT 4
- CHECKM_LINEAGEWF failing with exit status 1 HOT 7
- Error in executing PROKKA HOT 4
- Bins in CheckM summary do not match bins in bin depths summary HOT 7
- add diamond support to mag
- Improve documentation on the effects of completeness/contamination filters
- Replace CheckM with CheckM2 HOT 1
- Genome taxnomic classification with Sourmash HOT 3
- Pipeline completed sucessfully, but with errored process(es) HOT 1
- CAT_DB process has harcoded CAT subdirectory names HOT 1
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