Comments (3)
Progress Update: I now have a template branch, but I didn't feel like resolving all the merge conflicts on Friday evening. Will see how it goes on Monday!
from mag.
Thanks for the heads up! quite busy until Thursday (I have my halftime seminar), I'll take care of that on Friday
from mag.
no worries, I just wanted to add the issues for this everywhere, so I do not forget to do it :D
from mag.
Related Issues (20)
- Add coverm/contig and coverm/genome as options for calculating read alignment metrics
- Expanded documentation for nf-core/mag use cases & downstream analysis
- Add documentation detailing phageome/virome analysis
- Pipeline fails if only CONCOCT is turned on and other binners off
- CONCOCT (slow) HOT 1
- Single end data input
- Problem with DUMPSOFTWAREVERSIONS HOT 2
- Centrifuge error - (ERR): mkfifo(/tmp/46.inpipe1) failed. HOT 3
- NFCORE_MAG:MAG:GTDBTK:GTDBTK_CLASSIFYWF fails when all genomes classified by ANI screening step HOT 4
- CHECKM_LINEAGEWF failing with exit status 1 HOT 7
- Error in executing PROKKA HOT 4
- Bins in CheckM summary do not match bins in bin depths summary HOT 7
- add diamond support to mag
- Improve documentation on the effects of completeness/contamination filters
- Replace CheckM with CheckM2 HOT 1
- Genome taxnomic classification with Sourmash HOT 3
- Pipeline completed sucessfully, but with errored process(es) HOT 1
- CAT_DB process has harcoded CAT subdirectory names HOT 1
- List of tool versions HOT 1
- Skipping NFCORE_MAG:MAG:BOWTIE2_PHIX_REMOVAL_ALIGN HOT 5
Recommend Projects
-
React
A declarative, efficient, and flexible JavaScript library for building user interfaces.
-
Vue.js
🖖 Vue.js is a progressive, incrementally-adoptable JavaScript framework for building UI on the web.
-
Typescript
TypeScript is a superset of JavaScript that compiles to clean JavaScript output.
-
TensorFlow
An Open Source Machine Learning Framework for Everyone
-
Django
The Web framework for perfectionists with deadlines.
-
Laravel
A PHP framework for web artisans
-
D3
Bring data to life with SVG, Canvas and HTML. 📊📈🎉
-
Recommend Topics
-
javascript
JavaScript (JS) is a lightweight interpreted programming language with first-class functions.
-
web
Some thing interesting about web. New door for the world.
-
server
A server is a program made to process requests and deliver data to clients.
-
Machine learning
Machine learning is a way of modeling and interpreting data that allows a piece of software to respond intelligently.
-
Visualization
Some thing interesting about visualization, use data art
-
Game
Some thing interesting about game, make everyone happy.
Recommend Org
-
Facebook
We are working to build community through open source technology. NB: members must have two-factor auth.
-
Microsoft
Open source projects and samples from Microsoft.
-
Google
Google ❤️ Open Source for everyone.
-
Alibaba
Alibaba Open Source for everyone
-
D3
Data-Driven Documents codes.
-
Tencent
China tencent open source team.
from mag.