Comments (2)
Note following issue:
[2022-04-23 09:09:54,015] multiqc.modules.malt.malt [DEBUG ] Duplicate sample name found! Overwriting: ERX5474930_ERR5766174_1
[2022-04-23 09:09:54,015] multiqc.modules.malt.malt [DEBUG ] Duplicate sample name found! Overwriting: 2613_ERR5766181.unmapped_1
[2022-04-23 09:09:54,015] multiqc.modules.malt.malt [DEBUG ] Duplicate sample name found! Overwriting: 2613_ERR5766181.unmapped_2
[2022-04-23 09:09:54,015] multiqc.modules.malt.malt [DEBUG ] Duplicate sample name found! Overwriting: 2612_ERR5766176.unmapped_1
[2022-04-23 09:09:54,015] multiqc.modules.malt.malt [DEBUG ] Duplicate sample name found! Overwriting: 2612_ERR5766176.unmapped_2
[2022-04-23 09:09:54,015] multiqc.modules.malt.malt [DEBUG ] Duplicate sample name found! Overwriting: 2612_ERR5766176_B.unmapped_1
[2022-04-23 09:09:54,015] multiqc.modules.malt.malt [DEBUG ] Duplicate sample name found! Overwriting: 2612_ERR5766176_B.unmapped_2
[2022-04-23 09:09:54,016] multiqc.modules.malt.malt [DEBUG ] Duplicate sample name found! Overwriting: 2612_ERR5766180.unmapped
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Ok BBDuk not displayed as our particular command isn't supported by MQC (as in the requested search patterns not found)
https://github.com/ewels/MultiQC/blob/master/multiqc/utils/search_patterns.yaml
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Related Issues (20)
- megan version 6.21.7 throw `java.lang.NullPointerException` error HOT 5
- Allow multiple bracken profiles with different `-l` levels from the same kraken2 report HOT 1
- Adding GetOrganelle HOT 10
- Add Nanoq for Nanopore reads
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- Generate samplesheet for nf-core/mag HOT 4
- Logo does not match the logo in tube HOT 1
- Move/copy DB troubleshooting content from Usage/Tutorial to Usage/ or new Usage/Database-troubleshooting HOT 1
- Failed to produce kaiju_combined_reports.txt HOT 4
- Current UNTAR scheme inefficent and can cause overwriting for database sheet input HOT 1
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- Database parameter validation for bracken doesn't work currently
- taxprofiler krona output files missing HOT 1
- Recommended procedure for profiling nanopore data HOT 1
- The run_accession and sample_name should be unique.
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