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s06's Introduction

S06 - BODC parameter semantic model parameter properties (quantitative and qualitative or nominal)

A controlled vocabulary for the parameter entity component of a P01 parameter concept in the BODC parameter semantic model

Terms and mappings available from: http://vocab.nerc.ac.uk/collection/S06/current/

Search interface: https://www.bodc.ac.uk/resources/vocabularies/vocabulary_search/S06/

Request for new terms and ways to contribute

Request for new terms can be submitted using this generic form

Suggestions for improving content or correcting errors can be submitted as regular issues in this repository or by email to vocab.services-at-bodc.ac.uk.

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s06's Issues

NTR: Pressure (BODCNVS-1059)

Required

Term name (PrefLabel)

Pressure

Definition

Force per unit area applied in the direction perpendicular to a surface. For pressure measurements used to express the depth (vertical coordinate) in a water body use SDN:S06::S0600168.

Sources/references

[Please enter a link to a reference source]

Optional

Synonym or acronym (AltLabel)

[Only use if the new term has known synonyms or acronyms]

Mapping to external terminologies

[Is your submission related to any existing terms in external resources: please enter one or a list of URIs]

ORCID

[Enter your ORCID if desired]

Additional information

[Any additional information about the new term]

NTR: Mass concentration

Required

Term name (PrefLabel)

Mass concentration

Definition

The mass of a substance or consituent divided by the volume of the mixture, expressed as mass per unit volume.

Sources/references

QUDT http://qudt.org/vocab/quantitykind/MassConcentration

Optional

Synonym or acronym (AltLabel)

[Only use if the new term has known synonyms or acronyms]

Mapping to external terminologies

[Is your submission related to any existing terms in external resources: please enter one or a list of URIs]

ORCID

[Enter your ORCID if desired]

Additional information

[Any additional information about the new term]

NTR: Sauter mean diameter (BODCNVS-1059)

Required

Term name (PrefLabel)

Sauter mean diameter

Definition

An average of particle size determined as the average diameter of a collection of spherical particles that have the same volume/surface area ratio as a particle of interest.

Sources/references

https://doi.org/10.1080/02726351.2015.1099582

Optional

Synonym or acronym (AltLabel)

SMD or surface-volume mean

Mapping to external terminologies

[Is your submission related to any existing terms in external resources: please enter one or a list of URIs]

ORCID

[Enter your ORCID if desired]

Additional information

[Any additional information about the new term]

NTR: Request for S06 Enrichment with respect to VCDT

Required

Term name (PrefLabel)

Enrichment with respect to VCDT

Definition

The change in the relative abundance of an isotope of a given element relative to its relative abundance in the Vienna Canyon Diablo Troilite (VCDT) international measurement standard, also known as IAEA-S-1 and formerly known as NZ-1 (NIST 8554), a reference material for relative sulfur isotope ratio measurements.

Optional

Sources/references

https://en.wikipedia.org/wiki/%CE%9434Shttps://www-s.nist.gov/srmors/certificates/8554.pdfhttps://github.com/nvs-vocabs/P01/issues/72

NTR: Mass per unit area

Required

Term name (PrefLabel)

Mass per unit area

Definition

Mass per unit area

Sources/references

eReefs

Optional

Synonym or acronym (AltLabel)

[Only use if the new term has known synonyms or acronyms]

Mapping to external terminologies

[Is your submission related to any existing terms in external resources: please enter one or a list of URIs]

ORCID

orcid.org/0000-0002-3884-3420

Additional information

Broader concept than http://vocab.nerc.ac.uk/collection/S06/current/S0600088/ and http://vocab.nerc.ac.uk/collection/S06/current/S0600086/

NTR: Request for S06 Density (dry bulk) (BODCNVS-1232)

Required

Term name (PrefLabel)

Density (dry bulk)

Definition

Mass of dry matter contained in a sample of soil or sediment divided by the volume of the sample before drying.

Optional

Sources/references

adapted from https://en.wikipedia.org/wiki/Bulk_density

NTR: Net upward flux (into atmosphere)

Required

Term name (PrefLabel)

Net upward flux (into atmosphere)

Definition

Rate of transfer through a surface in contact with the atmosphere in an upward direction, positive values indicating a net upward flow into the atmosphere and negative values indicating a net downward flow from the atmosphere.

Sources/references

eReefs modeling variables

Optional

Synonym or acronym (AltLabel)

[Only use if the new term has known synonyms or acronyms]

Mapping to external terminologies

[Is your submission related to any existing terms in external resources: please enter one or a list of URIs]

ORCID

[Enter your ORCID if desired]

Additional information

We recently created a term for Net upward flux but our semantic model currently does not allow us to specify both the source and destination matrix. So we decided to create this new, more specific S06 code that makes the destination matrix explicit. The source matrix is defined in the P01 via the Matrix component.

NTR: Request for S06 Horizontal visibility

Required

Term name (PrefLabel)

Horizontal visibility

Definition

Maximum distance at which an observer can see and identify an object lying close to the horizontal plane on which he or she is standing. (source: AMS glossary, 20200219)

Optional

Sources/references

http://glossary.ametsoc.org/wiki/Horizontal_visibility

ORCID

0000-0001-6559-4178

NTR: Request for Width (in digital image)

Required

Term name (PrefLabel)

Width (in digital image) of biological entity specified elsewhere

Definition

The width of the digital representation of an organism in a digital image measured in number of pixels.

Sources/references

This submission is related to the existing term: Length (in digital image) of biological entity specified elsewhere, http://vocab.nerc.ac.uk/collection/S06/current/S0600149/

Optional

ORCID

https://orcid.org/0000-0003-3293-5612

NTR: Request for S06 Dew-point temperature (BODCNVS-740)

Required

Term name (PrefLabel)

Dew-point temperature

Definition

The temperature to which air must cool to become saturated with water vapour.

Optional

Mapping to other terminologies

https://unterm.un.org/unterm/display/record/wmo/na?OriginalId=3d02b1e9-a4b1-46ac-aeb1-1afccd08e2bd

NTR: Request for S06 Friction velocity (BODCNVS-339)

Required

Term name (PrefLabel)

Friction velocity

Definition

A way of expressing shear stress in units of velocity. Defined as the square root of shear stress divided by fluid density, it is used in fluid mechanics to compare true velocities to a velocity that relates to shear between layers of flow. It is also known as shear velocity.

Optional

Sources/references

https://www.aiche.org/ccps/resources/glossary/process-safety-glossary/friction-velocity-uhttps://www.thermopedia.com/content/790/https://www.sciencedirect.com/topics/engineering/friction-velocity

ORCID

roswri

Deprecate "Lipid-normalised concentration" and replace by "Concentration"

We are changing the structure of P01 codes related to lipid-normalised concentrations of contaminants in biota (see for example: http://vocab.nerc.ac.uk/collection/P01/current/HCBLCF30/). A new S02 (containing terms that express the relationship between the property of an object and the matrix in the P01 semantic model) has been created for "per unit mass of lipids" (nvs-vocabs/S02#1) and will be used to restructure the P01 preferred label of those P01 codes.

NTR: Request for S06 Location (geographic coordinates)

Required

Term name (PrefLabel)

Location (geographic coordinates)

Definition

A location relative to the surface of the Earth, or other planetary or stellar body, represented by a point, line, arc, or any other type of polygon and defined by encoding the coordinates of the location in a known Coordinate Reference System. Where possible the Coordinate Reference System used should be specified elsewhere in the metadata by a term from a well defined and managed register such as the European Petroleum Survey Group (EPSG) Geodetic Parameter Dataset.

Optional

Sources/references

https://github.com/nvs-vocabs/P01/issues/33

NTR: Request for S06 Remote sensing reflectance

Required

Term name (PrefLabel)

Remote sensing reflectance

Definition

The ratio of water-leaving radiance (Lw, units: µW cm−2 sr−1 nm−1) to downwelling irradiance just above the sea surface (Es, units: µW cm−2 nm−1) (O’Reilly et al., 1998).

Optional

Sources/references

https://oceancolor.gsfc.nasa.gov/atbd/rrs/https://github.com/nvs-vocabs/P01/issues/125

NTR: Material flux

Required

Term name (PrefLabel)

Material flux

Definition

Amount or mass of substance crossing a unit area per unit time

Sources/references

eReefs

Optional

Synonym or acronym (AltLabel)

[Only use if the new term has known synonyms or acronyms]

Mapping to external terminologies

[Is your submission related to any existing terms in external resources: please enter one or a list of URIs]

ORCID

orcid.org/0000-0002-3884-3420

Additional information

Potentially two specializations, for mass (units kg.m-2.s-1) and amount of substance (units mol.m-2.s-1)
[Any additional information about the new term]

NTR: Request for S06 Latent heat flux (BODCNVS-339)

Required

Term name (PrefLabel)

Latent heat flux

Definition

The heat used to evaporate water from the ocean surface, resulting in ocean cooling, which is then released to warm the atmosphere when the vapour condenses to form clouds.

Optional

Sources/references

https://journals.ametsoc.org/view/journals/clim/30/1/jcli-d-16-0285.1.xml

ORCID

49520162

NTR: New S06 terms for different pH scales

To remodel our pH parameters to the new PUV semantic model, we need to create several new S06 terms for the various pH scales, as follows:

Preferred label - pH (total scale)
Description - A measure of acidity based on the free proton (hydrogen ion) concentration plus hydrogen sulfate ion concentration.

Preferred label - pH (free scale)
Description - A measure of acidity based on the free proton (hydrogen ion) concentration.

Preferred label - pH (seawater scale)
Description - A measure of acidity based on the free proton (hydrogen ion) concentration plus hydrogen sulfate ion concentration plus fluoride ion concentration.

Preferred label - pH (NBS scale)
Description - A measure of acidity based on the National Bureau of Standards' operational pH scale which denotes the negative of the common logarithm of the free proton (hydrogen ion) activity, -log ag.

NTR: Request for S06 Biomass as nitrogen (BODCNVS-1000)

Required

Term name (PrefLabel)

Biomass as nitrogen

Definition

Mass of living biological organisms measured or expressed as the mass of organically bound nitrogen.

Optional

ORCID

gwemon (github ID)

Mapping to other terminologies

http://vocab.nerc.ac.uk/collection/P24/current/NMASS/

NTR: Request for Area (in digital image) (BODCNVS-1876)

Required

Term name (PrefLabel)

Area (in digital image)

Definition

The total surface area (length*length) of an object captured in a digital image and normally expressed in µm2 or mm2.

Sources/references

http://thesauri.lifewatchitaly.eu/PhytoTraits/index.php?tema=16&/surface-area
Gorsky et. al. 2010, https://doi.org/10.1093/plankt/fbp124

Optional

Mapping to external terminologies

http://vocab.nerc.ac.uk/collection/P24/current/AREA/1/

ORCID

https://orcid.org/0000-0003-3293-5612

NTR: Net upward flux for eReefs project

Required

Term name (PrefLabel)

Net upward flux

Definition

Rate of transfer through a surface or a substance in an upward direction, positive values indicating a net upward flow and negative values indicating a net downward flow.

Sources/references

N/A

Optional

Synonym or acronym (AltLabel)

N/A

Mapping to external terminologies

N/A

ORCID

N/A

Additional information

Term to support the creation of eReefs project P01 terms.

NTR: Request for S06 Fish Length parameters (BODCNVS-737)

Hi there,

I was hoping to request a few new terms relevant to measuring fish lengths for the S06 repository:

Fork length Length measured from the tip of the snout in a straight line to the posterior end of the shortest caudal rays in the center of the fork. Length is measured in millimeters.
Total length Length measured from the tip of the snout in a straight line to the posterior end of the caudal fin. Length is measured in millimeters.
Second dorsal length For ratfish: length in millimeters measured from the snout to the posterior edge of the posterior lobe of the second dorsal fin.

If you need any additional information or references for the definitions, please let me know!

NTR: Relative loss rate

Required

Term name (PrefLabel)

Relative loss rate

Definition

The rate at which the quantity of an entity decreases.

Sources/references

To be modelled similar to existing terms, e.g. particularly S0600009: Evacuation Rate The rate at which an organism disposes of a substance as solid waste.

Optional

Synonym or acronym (AltLabel)

n/a

Mapping to external terminologies

n/a

ORCID

n/a

Additional information

n/a

NTR: Request for S06 Sensible heat flux (BODCNVS-339)

Required

Term name (PrefLabel)

Sensible heat flux

Definition

The transfer of heat caused by the difference in temperature between the sea and the air.

Optional

Sources/references

https://www.sciencedirect.com/topics/earth-and-planetary-sciences/sensible-heat-flux

ORCID

49520162

NTR: Request for S06 Radial velocity (away from)

Required

Term name (PrefLabel)

Radial velocity (away from)

Definition

The rate at which matter or an object moves away from a reference point along a line connecting the reference point to the moving object or particle of matter. In radar technology it is the component of the target''s motion that is along the radar beam.

Optional

Sources/references

BODCNVS-368 (https://github.com/nvs-vocabs/P01/issues/49)

ORCID

https://orcid.org/0000-0001-6559-4178

Mapping to other terminologies

Has broad match: http://qudt.org/vocab/quantitykind/Velocity

NTR: Request for S06 Radius

Required

Term name (PrefLabel)

Radius

Definition

The distance between the centre of a sphere or a circle and any points on its perimeter.

Optional

NTR: Request for S06 Size category (BODCNVS-989)

Required

Term name (PrefLabel)

Size category

Definition

Terms used in the contruction of a complex variable description when the objects of interest need to be grouped according to their size. These categories may be expressed as text (e.g. "small", "large") or size intervals (e.g. ">200um", "20-20um"). It is recommended that the result be constrained by a controlled vocabulary such as [S09](http://vocab.nerc.ac.uk/collection/S09/current/) for biological objects.

Optional

Sources/references

https://github.com/nvs-vocabs/P01/issues/65

NTR: Request for S06 Richter Scale magnitude

Required

Term name (PrefLabel)

Richter Scale magnitude

Definition

The logarithm of the amplitude of seismic waves released during a rupture of Earth's crust (earthquake), recorded by seismographs. Also known as the local magnitude scale (ML), it was developed in 1935 by Charles F. Richter.

Optional

Sources/references

https://www.usgs.gov/natural-hazards/earthquake-hazards/science/earthquake-magnitude-energy-release-and-shaking-intensity?qt-science_center_objects=0#qt-science_center_objects https://earthquake.usgs.gov/learn/glossary/?term=Richter%20scale#:~:text=The%20Richter%20magnitude%20scale%20was,of%20waves%20recorded%20by%20seismographs.

Synonym or acronym (AltLabel)

ML

Mapping to other terminologies

Migration to GP_MODEL of: http://vocab.nerc.ac.uk/collection/P01/current/RICHTERX/

NTR: Request for S06 Two-way travel time

Required

Term name (PrefLabel)

Two-way travel time

Definition

The time taken for an acoustic signal to travel from its source to a reflecting or refracting surface and back to a receiver (TWT).

Optional

Sources/references

https://www.geoexpro.com/articles/2018/05/a-simple-guide-to-seismic-depth-conversion-i https://www.glossary.oilfield.slb.com/en/Terms/t/two-way_traveltime.aspx https://oceanexplorer.noaa.gov/technology/tools/sonar/sonar.html

Synonym or acronym (AltLabel)

TWT

Mapping to other terminologies

For migration to GP_MODEL of: http://vocab.nerc.ac.uk/collection/P01/current/SR3DTTSS/ http://vocab.nerc.ac.uk/collection/P01/current/SR2DTTSS/ http://vocab.nerc.ac.uk/collection/P01/current/TRTM2WAY/ http://vocab.nerc.ac.uk/collection/P01/current/TRTM2WPR/

NTR: Request for S06 Photochemical oxygen demand

Required

Term name (PrefLabel)

Photochemical oxygen demand

Definition

The amount of oxygen that is needed to oxidise all dissolved oxidisable chemical material contained in a unit volume of a water body under the influence of radiant energy (such as light).

Optional

Sources/references

https://www.researchgate.net/publication/255467943_Photochemical_oxygen_consumption_in_marine_waters_A_major_sink_for_colored_dissolved_organic_matterhttps://www.merriam-webster.com/dictionary/photooxidation

NTR: Request for S06 Duration

Required

Term name (PrefLabel)

Duration

Definition

The length of time that something lasts.

Optional

Sources/references

e.g. http://vocab.nerc.ac.uk/collection/P01/current/AZDRZZ01/

ORCID

0000-0001-6559-4178

Mapping to other terminologies

http://vocab.nerc.ac.uk/collection/P24/current/TIME/

NTR: Request for S06 Preserved wet weight

Required

Term name (PrefLabel)

Preserved wet weight

Definition

The weight of a biological sample following preservation in formaldehyde or ethanol for example.

Optional

Sources/references

Durden, J.M., Bett, B.J., Horton, T., Serpell-Stevens, A., Morris, K.J., Billett, D.S.M., Ruhl, H.A. (2016). Improving the estimation of deep-sea megabenthos biomass: dimension to wet weight conversions for abyssal invertebrates. Marine Ecology Progress Series, 552:71–79. [3]10.3354/meps11769.

NTR: Request for S06 One-way travel time

Required

Term name (PrefLabel)

One-way travel time

Definition

The time taken for an acoustic signal to travel from its source to a reflecting or refracting surface.

Optional

Sources/references

https://www.geoexpro.com/articles/2018/05/a-simple-guide-to-seismic-depth-conversion-i https://www.glossary.oilfield.slb.com/en/Terms/t/two-way_traveltime.aspx https://oceanexplorer.noaa.gov/technology/tools/sonar/sonar.html

Mapping to other terminologies

For migration to GP_MODEL of: http://vocab.nerc.ac.uk/collection/P01/current/STRVIO01/

NTR: Request for S06 Biochemical Oxygen Demand

Required

Term name (PrefLabel)

Biochemical Oxygen Demand

Definition

The amount of dissolved oxygen needed by aerobic biological organisms to break down organic material present in a given water sample at certain temperature over a specific time period.

Optional

Sources/references

https://www.sciencedirect.com/topics/agricultural-and-biological-sciences/biochemical-oxygen-demand

Synonym or acronym (AltLabel)

Biological oxygen demand

NTR: Request for S06 Total alkalinity

Required

Term name (PrefLabel)

Total alkalinity

Definition

The acid-neutralising capacity of solutes in an aqueous system or sample.

Optional

Sources/references

https://pubs.usgs.gov/twri/twri9a6/twri9a66/twri9a_6.6.pdf

Synonym or acronym (AltLabel)

TA

NTR: Wind-chill equivalent temperature

Required

Term name (PrefLabel)

Wind-chill equivalent temperature

Definition

Apparent temperature ("feels-like temperature") which would result in the same cooling effect as would be calculated from combined effect of air temperature (as per dry bulb air temperature) and wind speed.

Sources/references

Source dataset specifies: "The wind chill equivalent temperature (also called the wind chill index, the wind chill factor, or just plain wind chill), is the temperature required under no-wind conditions that will equal the cooling effect of the air (the actual air temperature) and the wind on an average size, nude person in the shade. Moisture content of the air, visible moisture on the skin or clothing, presence of sunshine, clothing, and physical activity are not considered."

See also https://journals.ametsoc.org/doi/pdf/10.1175/BAMS-86-10-1453

Optional

Synonym or acronym (AltLabel)

[Only use if the new term has known synonyms or acronyms]

Mapping to external terminologies

[Is your submission related to any existing terms in external resources: please enter one or a list of URIs]

ORCID

[Enter your ORCID if desired]

Additional information

This new S06 term will be used to express http://vocab.nerc.ac.uk/collection/P01/current/WCHILL01/current/ according to the new semantic model.

NTR: Request for S06 Amplitude

Required

Term name (PrefLabel)

Amplitude

Definition

The maximum displacement of a periodic variable over a single spatial or temporal period.

Optional

NTR: Request for S06 Relative humidity (BODCNVS-740)

Required

Term name (PrefLabel)

Relative humidity

Definition

The ratio of the amount of water vapour in the air compared to the maximum amount of water vapour that can theoretically be held at the air's temperature.

Optional

Mapping to other terminologies

http://www.ontology-of-units-of-measure.org/resource/om-2/RelativeHumidityhttps://unterm.un.org/unterm/display/record/wmo/na?OriginalId=f3acc9e3-4177-4706-a880-5f582c92befa

NTR: Request for S06 Convective mass flux

Required

Term name (PrefLabel)

Convective mass flux

Definition

An average vertical transport of mass for a field of cumulus clouds or thermals (https://glossary.ametsoc.org/wiki/Convective_mass_flux).

Optional

Sources/references

https://glossary.ametsoc.org/wiki/Convective_mass_flux

Mapping to other terminologies

P07 concepts with preflabels like '%convective_mass_flux%' and canonical units set to http://vocab.nerc.ac.uk/collection/P06/current/KSP2/

NTR: Request for S06 Chemical Oxygen Demand

Required

Term name (PrefLabel)

Chemical Oxygen Demand

Definition

The amount of oxygen that is needed to oxidise the organic matter present in a quantity of water.

Optional

Sources/references

https://www.sciencedirect.com/topics/earth-and-planetary-sciences/chemical-oxygen-demand

NTR: Request for S06 Equivalent Spherical Diameter

Required

Term name (PrefLabel)

Equivalent spherical diameter

Definition

The diameter of a spherical particle which will give identical geometric, optical, electrical or aerodynamic behaviour to that of the particle (non-spherical) being examined; sometimes referred to as the Stokes diameter for particles in non-turbulent flows (Source: IUPAC, 1990. Glossary of atmospheric chemistry terms (Recommendations 1990), https://doi.org/10.1351/pac199062112167 )

Optional

Sources/references

Jennings, B. R. and Parslow, K. (1988) Particle Size Measurement: The Equivalent Spherical Diameter. Proceedings of the Royal Society of London. Series A 419, 137-149http://thesauri.lifewatchitaly.eu/PhytoTraits/index.php?tema=18&/equivalent-spherical-diameterhttps://goldbook.iupac.org/terms/view/E02191

Synonym or acronym (AltLabel)

ESD

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