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BODC parameter semantic model parameter entity names
Mayor axis length (in digital image)
The length of the primary axis of the best fitting ellipse of an object captured in a digital image and normally expressed in µm or mm.
Gorsky et. al. 2010, https://doi.org/10.1093/plankt/fbp124
http://vocab.nerc.ac.uk/collection/S06/current/S0600149/1/
Term name (PrefLabel)
Vertical attenuation
Definition
The proportion of any kind of flux or signal that is lost when absorbed or scattered by a medium along the vertical Z axis.
Sources/references
Term name (PrefLabel)
Dew-point temperature
Definition
The temperature to which air must cool to become saturated with water vapour.
Mapping to other terminologies
https://unterm.un.org/unterm/display/record/wmo/na?OriginalId=3d02b1e9-a4b1-46ac-aeb1-1afccd08e2bd
Mass concentration
The mass of a substance or consituent divided by the volume of the mixture, expressed as mass per unit volume.
QUDT http://qudt.org/vocab/quantitykind/MassConcentration
[Only use if the new term has known synonyms or acronyms]
[Is your submission related to any existing terms in external resources: please enter one or a list of URIs]
[Enter your ORCID if desired]
[Any additional information about the new term]
Term name (PrefLabel)
Total alkalinity
Definition
The acid-neutralising capacity of solutes in an aqueous system or sample.
Sources/references
https://pubs.usgs.gov/twri/twri9a6/twri9a66/twri9a_6.6.pdf
Synonym or acronym (AltLabel)
TA
Pressure
Force per unit area applied in the direction perpendicular to a surface. For pressure measurements used to express the depth (vertical coordinate) in a water body use SDN:S06::S0600168.
[Please enter a link to a reference source]
[Only use if the new term has known synonyms or acronyms]
[Is your submission related to any existing terms in external resources: please enter one or a list of URIs]
[Enter your ORCID if desired]
[Any additional information about the new term]
Net upward flux
Rate of transfer through a surface or a substance in an upward direction, positive values indicating a net upward flow and negative values indicating a net downward flow.
N/A
N/A
N/A
N/A
Term to support the creation of eReefs project P01 terms.
Width (in digital image) of biological entity specified elsewhere
The width of the digital representation of an organism in a digital image measured in number of pixels.
This submission is related to the existing term: Length (in digital image) of biological entity specified elsewhere, http://vocab.nerc.ac.uk/collection/S06/current/S0600149/
Term name (PrefLabel)
Biochemical Oxygen Demand
Definition
The amount of dissolved oxygen needed by aerobic biological organisms to break down organic material present in a given water sample at certain temperature over a specific time period.
Sources/references
https://www.sciencedirect.com/topics/agricultural-and-biological-sciences/biochemical-oxygen-demand
Synonym or acronym (AltLabel)
Biological oxygen demand
Term name (PrefLabel)
Amplitude
Definition
The maximum displacement of a periodic variable over a single spatial or temporal period.
Net upward flux (into atmosphere)
Rate of transfer through a surface in contact with the atmosphere in an upward direction, positive values indicating a net upward flow into the atmosphere and negative values indicating a net downward flow from the atmosphere.
eReefs modeling variables
[Only use if the new term has known synonyms or acronyms]
[Is your submission related to any existing terms in external resources: please enter one or a list of URIs]
[Enter your ORCID if desired]
We recently created a term for Net upward flux but our semantic model currently does not allow us to specify both the source and destination matrix. So we decided to create this new, more specific S06 code that makes the destination matrix explicit. The source matrix is defined in the P01 via the Matrix component.
Term name (PrefLabel)
Equivalent spherical diameter
Definition
The diameter of a spherical particle which will give identical geometric, optical, electrical or aerodynamic behaviour to that of the particle (non-spherical) being examined; sometimes referred to as the Stokes diameter for particles in non-turbulent flows (Source: IUPAC, 1990. Glossary of atmospheric chemistry terms (Recommendations 1990), https://doi.org/10.1351/pac199062112167 )
Sources/references
Jennings, B. R. and Parslow, K. (1988) Particle Size Measurement: The Equivalent Spherical Diameter. Proceedings of the Royal Society of London. Series A 419, 137-149http://thesauri.lifewatchitaly.eu/PhytoTraits/index.php?tema=18&/equivalent-spherical-diameterhttps://goldbook.iupac.org/terms/view/E02191
Synonym or acronym (AltLabel)
ESD
Term name (PrefLabel)
Biomass as carbon
Definition
Mass of living biological organisms measured or expressed as the mass of organically bound carbon.
Term name (PrefLabel)
Size category
Definition
Terms used in the contruction of a complex variable description when the objects of interest need to be grouped according to their size. These categories may be expressed as text (e.g. "small", "large") or size intervals (e.g. ">200um", "20-20um"). It is recommended that the result be constrained by a controlled vocabulary such as [S09](http://vocab.nerc.ac.uk/collection/S09/current/) for biological objects.
Sources/references
https://github.com/nvs-vocabs/P01/issues/65
To remodel our pH parameters to the new PUV semantic model, we need to create several new S06 terms for the various pH scales, as follows:
Preferred label - pH (total scale)
Description - A measure of acidity based on the free proton (hydrogen ion) concentration plus hydrogen sulfate ion concentration.
Preferred label - pH (free scale)
Description - A measure of acidity based on the free proton (hydrogen ion) concentration.
Preferred label - pH (seawater scale)
Description - A measure of acidity based on the free proton (hydrogen ion) concentration plus hydrogen sulfate ion concentration plus fluoride ion concentration.
Preferred label - pH (NBS scale)
Description - A measure of acidity based on the National Bureau of Standards' operational pH scale which denotes the negative of the common logarithm of the free proton (hydrogen ion) activity, -log ag.
Term name (PrefLabel)
Sensible heat flux
Definition
The transfer of heat caused by the difference in temperature between the sea and the air.
Sources/references
https://www.sciencedirect.com/topics/earth-and-planetary-sciences/sensible-heat-flux
ORCID
49520162
Term name (PrefLabel)
Radius
Definition
The distance between the centre of a sphere or a circle and any points on its perimeter.
Term name (PrefLabel)
Photochemical oxygen demand
Definition
The amount of oxygen that is needed to oxidise all dissolved oxidisable chemical material contained in a unit volume of a water body under the influence of radiant energy (such as light).
Sources/references
https://www.researchgate.net/publication/255467943_Photochemical_oxygen_consumption_in_marine_waters_A_major_sink_for_colored_dissolved_organic_matterhttps://www.merriam-webster.com/dictionary/photooxidation
Term name (PrefLabel)
Relative humidity
Definition
The ratio of the amount of water vapour in the air compared to the maximum amount of water vapour that can theoretically be held at the air's temperature.
Mapping to other terminologies
http://www.ontology-of-units-of-measure.org/resource/om-2/RelativeHumidityhttps://unterm.un.org/unterm/display/record/wmo/na?OriginalId=f3acc9e3-4177-4706-a880-5f582c92befa
Term name (PrefLabel)
Chemical Oxygen Demand
Definition
The amount of oxygen that is needed to oxidise the organic matter present in a quantity of water.
Sources/references
https://www.sciencedirect.com/topics/earth-and-planetary-sciences/chemical-oxygen-demand
We are changing the structure of P01 codes related to lipid-normalised concentrations of contaminants in biota (see for example: http://vocab.nerc.ac.uk/collection/P01/current/HCBLCF30/). A new S02 (containing terms that express the relationship between the property of an object and the matrix in the P01 semantic model) has been created for "per unit mass of lipids" (nvs-vocabs/S02#1) and will be used to restructure the P01 preferred label of those P01 codes.
Term name (PrefLabel)
Location (geographic coordinates)
Definition
A location relative to the surface of the Earth, or other planetary or stellar body, represented by a point, line, arc, or any other type of polygon and defined by encoding the coordinates of the location in a known Coordinate Reference System. Where possible the Coordinate Reference System used should be specified elsewhere in the metadata by a term from a well defined and managed register such as the European Petroleum Survey Group (EPSG) Geodetic Parameter Dataset.
Sources/references
https://github.com/nvs-vocabs/P01/issues/33
Term name (PrefLabel)
Remote sensing reflectance
Definition
The ratio of water-leaving radiance (Lw, units: µW cm−2 sr−1 nm−1) to downwelling irradiance just above the sea surface (Es, units: µW cm−2 nm−1) (O’Reilly et al., 1998).
Sources/references
https://oceancolor.gsfc.nasa.gov/atbd/rrs/https://github.com/nvs-vocabs/P01/issues/125
Term name (PrefLabel)
Convective mass flux
Definition
An average vertical transport of mass for a field of cumulus clouds or thermals (https://glossary.ametsoc.org/wiki/Convective_mass_flux).
Sources/references
https://glossary.ametsoc.org/wiki/Convective_mass_flux
Mapping to other terminologies
P07 concepts with preflabels like '%convective_mass_flux%' and canonical units set to http://vocab.nerc.ac.uk/collection/P06/current/KSP2/
Term name (PrefLabel)
Two-way travel time
Definition
The time taken for an acoustic signal to travel from its source to a reflecting or refracting surface and back to a receiver (TWT).
Sources/references
https://www.geoexpro.com/articles/2018/05/a-simple-guide-to-seismic-depth-conversion-i https://www.glossary.oilfield.slb.com/en/Terms/t/two-way_traveltime.aspx https://oceanexplorer.noaa.gov/technology/tools/sonar/sonar.html
Synonym or acronym (AltLabel)
TWT
Mapping to other terminologies
For migration to GP_MODEL of: http://vocab.nerc.ac.uk/collection/P01/current/SR3DTTSS/ http://vocab.nerc.ac.uk/collection/P01/current/SR2DTTSS/ http://vocab.nerc.ac.uk/collection/P01/current/TRTM2WAY/ http://vocab.nerc.ac.uk/collection/P01/current/TRTM2WPR/
Term name (PrefLabel)
Surface elevation
Definition
The height above or below a fixed reference point.
Mass per unit area
Mass per unit area
eReefs
[Only use if the new term has known synonyms or acronyms]
[Is your submission related to any existing terms in external resources: please enter one or a list of URIs]
orcid.org/0000-0002-3884-3420
Broader concept than http://vocab.nerc.ac.uk/collection/S06/current/S0600088/ and http://vocab.nerc.ac.uk/collection/S06/current/S0600086/
Minor axis length (in digital image)
The length of the secondary axis of the best fitting ellipse of an object captured in a digital image and normally expressed in µm or mm.
Gorsky et. al. 2010, https://doi.org/10.1093/plankt/fbp124
http://vocab.nerc.ac.uk/collection/S06/current/S0600149/1/
Term name (PrefLabel)
One-way travel time
Definition
The time taken for an acoustic signal to travel from its source to a reflecting or refracting surface.
Sources/references
https://www.geoexpro.com/articles/2018/05/a-simple-guide-to-seismic-depth-conversion-i https://www.glossary.oilfield.slb.com/en/Terms/t/two-way_traveltime.aspx https://oceanexplorer.noaa.gov/technology/tools/sonar/sonar.html
Mapping to other terminologies
For migration to GP_MODEL of: http://vocab.nerc.ac.uk/collection/P01/current/STRVIO01/
Term name (PrefLabel)
Richter Scale magnitude
Definition
The logarithm of the amplitude of seismic waves released during a rupture of Earth's crust (earthquake), recorded by seismographs. Also known as the local magnitude scale (ML), it was developed in 1935 by Charles F. Richter.
Sources/references
https://www.usgs.gov/natural-hazards/earthquake-hazards/science/earthquake-magnitude-energy-release-and-shaking-intensity?qt-science_center_objects=0#qt-science_center_objects https://earthquake.usgs.gov/learn/glossary/?term=Richter%20scale#:~:text=The%20Richter%20magnitude%20scale%20was,of%20waves%20recorded%20by%20seismographs.
Synonym or acronym (AltLabel)
ML
Mapping to other terminologies
Migration to GP_MODEL of: http://vocab.nerc.ac.uk/collection/P01/current/RICHTERX/
Term name (PrefLabel)
Friction velocity
Definition
A way of expressing shear stress in units of velocity. Defined as the square root of shear stress divided by fluid density, it is used in fluid mechanics to compare true velocities to a velocity that relates to shear between layers of flow. It is also known as shear velocity.
Sources/references
https://www.aiche.org/ccps/resources/glossary/process-safety-glossary/friction-velocity-uhttps://www.thermopedia.com/content/790/https://www.sciencedirect.com/topics/engineering/friction-velocity
ORCID
roswri
Wind-chill equivalent temperature
Apparent temperature ("feels-like temperature") which would result in the same cooling effect as would be calculated from combined effect of air temperature (as per dry bulb air temperature) and wind speed.
Source dataset specifies: "The wind chill equivalent temperature (also called the wind chill index, the wind chill factor, or just plain wind chill), is the temperature required under no-wind conditions that will equal the cooling effect of the air (the actual air temperature) and the wind on an average size, nude person in the shade. Moisture content of the air, visible moisture on the skin or clothing, presence of sunshine, clothing, and physical activity are not considered."
See also https://journals.ametsoc.org/doi/pdf/10.1175/BAMS-86-10-1453
[Only use if the new term has known synonyms or acronyms]
[Is your submission related to any existing terms in external resources: please enter one or a list of URIs]
[Enter your ORCID if desired]
This new S06 term will be used to express http://vocab.nerc.ac.uk/collection/P01/current/WCHILL01/current/ according to the new semantic model.
Sauter mean diameter
An average of particle size determined as the average diameter of a collection of spherical particles that have the same volume/surface area ratio as a particle of interest.
https://doi.org/10.1080/02726351.2015.1099582
SMD or surface-volume mean
[Is your submission related to any existing terms in external resources: please enter one or a list of URIs]
[Enter your ORCID if desired]
[Any additional information about the new term]
Term name (PrefLabel)
Biomass as nitrogen
Definition
Mass of living biological organisms measured or expressed as the mass of organically bound nitrogen.
ORCID
gwemon (github ID)
Mapping to other terminologies
http://vocab.nerc.ac.uk/collection/P24/current/NMASS/
The definition of Depth matches what is often called "thickness (vertical)" - maybe add an alternative label?
Term name (PrefLabel)
Duration
Definition
The length of time that something lasts.
Sources/references
e.g. http://vocab.nerc.ac.uk/collection/P01/current/AZDRZZ01/
ORCID
0000-0001-6559-4178
Mapping to other terminologies
http://vocab.nerc.ac.uk/collection/P24/current/TIME/
Term name (PrefLabel)
shell weight
Definition
weight of dried empty shell
Term name (PrefLabel)
Density (dry bulk)
Definition
Mass of dry matter contained in a sample of soil or sediment divided by the volume of the sample before drying.
Sources/references
adapted from https://en.wikipedia.org/wiki/Bulk_density
Hi there,
I was hoping to request a few new terms relevant to measuring fish lengths for the S06 repository:
Fork length Length measured from the tip of the snout in a straight line to the posterior end of the shortest caudal rays in the center of the fork. Length is measured in millimeters.
Total length Length measured from the tip of the snout in a straight line to the posterior end of the caudal fin. Length is measured in millimeters.
Second dorsal length For ratfish: length in millimeters measured from the snout to the posterior edge of the posterior lobe of the second dorsal fin.
If you need any additional information or references for the definitions, please let me know!
Horizontal visibility
Definition
Maximum distance at which an observer can see and identify an object lying close to the horizontal plane on which he or she is standing. (source: AMS glossary, 20200219)
Sources/references
http://glossary.ametsoc.org/wiki/Horizontal_visibility
ORCID
0000-0001-6559-4178
Term name (PrefLabel)
1. Shell length
Definition
1. The longest dimension of the shell
Term name (PrefLabel)
Enrichment with respect to VCDT
Definition
The change in the relative abundance of an isotope of a given element relative to its relative abundance in the Vienna Canyon Diablo Troilite (VCDT) international measurement standard, also known as IAEA-S-1 and formerly known as NZ-1 (NIST 8554), a reference material for relative sulfur isotope ratio measurements.
Sources/references
https://en.wikipedia.org/wiki/%CE%9434Shttps://www-s.nist.gov/srmors/certificates/8554.pdfhttps://github.com/nvs-vocabs/P01/issues/72
Area (in digital image)
The total surface area (length*length) of an object captured in a digital image and normally expressed in µm2 or mm2.
http://thesauri.lifewatchitaly.eu/PhytoTraits/index.php?tema=16&/surface-area
Gorsky et. al. 2010, https://doi.org/10.1093/plankt/fbp124
http://vocab.nerc.ac.uk/collection/P24/current/AREA/1/
Material flux
Amount or mass of substance crossing a unit area per unit time
eReefs
[Only use if the new term has known synonyms or acronyms]
[Is your submission related to any existing terms in external resources: please enter one or a list of URIs]
orcid.org/0000-0002-3884-3420
Potentially two specializations, for mass (units kg.m-2.s-1) and amount of substance (units mol.m-2.s-1)
[Any additional information about the new term]
Term name (PrefLabel)
Radial velocity (away from)
Definition
The rate at which matter or an object moves away from a reference point along a line connecting the reference point to the moving object or particle of matter. In radar technology it is the component of the target''s motion that is along the radar beam.
Sources/references
BODCNVS-368 (https://github.com/nvs-vocabs/P01/issues/49)
ORCID
https://orcid.org/0000-0001-6559-4178
Mapping to other terminologies
Has broad match: http://qudt.org/vocab/quantitykind/Velocity
Term name (PrefLabel)
Sequence number
Definition
A number belonging to an ordered list of numbers.
Sources/references
https://github.com/nvs-vocabs/P01/issues/83
Relative loss rate
The rate at which the quantity of an entity decreases.
To be modelled similar to existing terms, e.g. particularly S0600009: Evacuation Rate The rate at which an organism disposes of a substance as solid waste.
n/a
n/a
n/a
n/a
Term name (PrefLabel)
Preserved wet weight
Definition
The weight of a biological sample following preservation in formaldehyde or ethanol for example.
Sources/references
Durden, J.M., Bett, B.J., Horton, T., Serpell-Stevens, A., Morris, K.J., Billett, D.S.M., Ruhl, H.A. (2016). Improving the estimation of deep-sea megabenthos biomass: dimension to wet weight conversions for abyssal invertebrates. Marine Ecology Progress Series, 552:71–79. [3]10.3354/meps11769.
Term name (PrefLabel)
Latent heat flux
Definition
The heat used to evaporate water from the ocean surface, resulting in ocean cooling, which is then released to warm the atmosphere when the vapour condenses to form clouds.
Sources/references
https://journals.ametsoc.org/view/journals/clim/30/1/jcli-d-16-0285.1.xml
ORCID
49520162
Term name (PrefLabel)
Saturation state
Definition
A measure of the thermodynamic potential for a mineral to form or to dissolve
Sources/references
https://github.com/nvs-vocabs/P01/issues/115
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