Giter Site home page Giter Site logo

otimusone / afpap Goto Github PK

View Code? Open in Web Editor NEW
8.0 2.0 3.0 9.99 MB

AlphaFold-based Protein Analysis Pipeline

License: MIT License

CSS 5.35% HTML 9.47% Python 67.20% Promela 0.94% Nextflow 16.53% Awk 0.50%
bioinformatics molecular-docking multiqc nextflow pdb pipeline protein python sequence-analysis structure-analysis

afpap's People

Contributors

otimusone avatar

Stargazers

avatar avatar avatar avatar avatar avatar avatar avatar

Watchers

avatar avatar

Forkers

rnaimehaom czabriskie changrong1023

afpap's Issues

PFAM database

Good Afternoon,

I've started putting together a dockerfile with all the dependencies required in the repo. It looks like there are a few dependencies without arm64 support, so for now it might need to just be Linux, but I'll push that as soon as I'm done.

I'm going to start adding issues, so hopefully I can start collaborating pretty soon.

Thanks for getting this project started. It is brilliant!

-Cam

We might be able to leverage an API to pull PFAM data instead of downloading all 1.5 gigs.

Use BLAST DB api

Instead of pulling entire blast database. Maybe we can use an API instead.

Recommend Projects

  • React photo React

    A declarative, efficient, and flexible JavaScript library for building user interfaces.

  • Vue.js photo Vue.js

    🖖 Vue.js is a progressive, incrementally-adoptable JavaScript framework for building UI on the web.

  • Typescript photo Typescript

    TypeScript is a superset of JavaScript that compiles to clean JavaScript output.

  • TensorFlow photo TensorFlow

    An Open Source Machine Learning Framework for Everyone

  • Django photo Django

    The Web framework for perfectionists with deadlines.

  • D3 photo D3

    Bring data to life with SVG, Canvas and HTML. 📊📈🎉

Recommend Topics

  • javascript

    JavaScript (JS) is a lightweight interpreted programming language with first-class functions.

  • web

    Some thing interesting about web. New door for the world.

  • server

    A server is a program made to process requests and deliver data to clients.

  • Machine learning

    Machine learning is a way of modeling and interpreting data that allows a piece of software to respond intelligently.

  • Game

    Some thing interesting about game, make everyone happy.

Recommend Org

  • Facebook photo Facebook

    We are working to build community through open source technology. NB: members must have two-factor auth.

  • Microsoft photo Microsoft

    Open source projects and samples from Microsoft.

  • Google photo Google

    Google ❤️ Open Source for everyone.

  • D3 photo D3

    Data-Driven Documents codes.