pachterlab/bgp_2023

bgp_2023's Issues

Error: technology string must contain two colons (:), none found: "10XATAC"

Hi,

Thanks for adding 10X ATAC-seq support to kb, I'm trying a command similar to this one (kb_python 0.27.3 installed):

!kb count
-i peaks.idx
-g t2g.txt
-x 10xATAC
-o out
-w 737K-cratac-v1.txt
-t 2
--h5ad
CB.fastq.gz R1.fastq.gz R2.fastq.gz

which raises the error 'technology string must contain two colons (:), none found: "10XATAC"'

Is there a publicly available version of kb_python (or kallisto) that supports this technology?

Many thanks!