persts/dotdotgoose

DotDotGoose is a free, open source tool to assist with manually counting objects in images

dotdotgoose's Issues

Feature Request: Saving images after dotting

Is there a way to save the image other than a screen shot? Preferably in jpeg or similar. Thanks!

Grouping points

It would be nice to be able to group points to track sizes of groups / herds, and get the counts of individuals in a herd.

Unable to load JPG images on Windows OS

Feature request: Undo clicks

Thanks so much for this wonderful tool!

As far as I can tell, if I click twice on an object or click in the wrong place, there's no way to undo the error without starting over. It would be nice to be able to Ctrl-Z or (for example) right-click to remove a dot.

Feature request - annotation layer

Hi all,
When multiple images cover an area of interest, it would be nice to be able to non-destructively annotate images with polygons, lines, and/or text to indicate where a count begin and ends on a given image so that it's easier to avoid double-counting.

make color space stretching optional

Artificially modifying the color space of the image can have a negative impact for some applications. Can this be made optional?

Fails to Launch on OSX (10.12 Sierra)

OSX file was downloaded. Immediately crashed upon attempt to open from desktop.

Feature request: support for georeference images/orthomosaic

The app has been used to count birds from georeferenced images (https://eprints.utas.edu.au/46914/1/150550%20-%20Erect-crested%20penguins%20on%20the%20Bounty%20Islands.pdf). The app would greatly benefit from the option to export the resulting point data using coordinates from georeference images.

Is it possible to compare two images side by side.

Hi,

Thank you for the excellent tool. I was wondering if there is a way to place two images side by side (T0, T1), that way, I can count on both images at once.

Cheers,
AP

Important Question!!!

So I'm writing a research paper on the usage of drones in accounting. Basically auditors take photos of inventory using the drones and upload images to DotDotGoose. One concern I wanna clear up in my paper is the security. Since this is a free service, is there guarantee that uploaded photos can't be stolen or shared? Just bc internal controls are a big importance in accounting. If someone could point me to a place I can read up on security policies or has the specific answer I would be so grateful!!

Feature Request - Copy/Paste/Move Highlighted Points

I use this program to help highlight/count assets in office floorplans. Since many offices utilize a similar cluster of desks across their floor layout, it would save a lot of time and clicking to only have to mark the assets in a single cluster, then copy/paste/move it across the floorplan for the others. I may only have make 10 accurate points and copy/paste them 20 times, instead of having to accurately click 200 times.

Something similar to the following steps would be ideal:

1. Hold shift and drag to highlight desired points
2. CTRL+C to copy the highlighted points
3. CTRL+V to paste the highlighted points as new points (perhaps with some default offset so they appear next to the ones copied)
4. M (or whatever key presses) and drag to move the selected points
5. Shift+click to deselect points (not sure if this is necessary, but seems to be the current method to remove the halos if desired)

This would also allow for moving a single point by just highlighting and performing the move step. This would be a helpful alternative to visually align points instead of guessing and checking repeatedly with ctrl+z/move mouse/ctrl+click.

This is a very nice little application and has been very helpful for me! Thanks for making it!!

ability to alter brightness, sharpness, and contrast while counting the image

USFWS users request the ability to adjust the images contrast and brightness during counting. These settings don't need to be saved and will be adjusted

Use case: Biologist count rocky islands that have crevasse and shadows that make it difficult to view the birds/nests. So during the counting they shift the brightness, sharpness, contrast on the fly to be able to dot in different regions of the images. They don't need to save the alterations.

FWS Data Managers would like to be able to contribute to the development of this feature.

Malware Detected - App not working

I downloaded it today to help with a cell count, but when I went to extract the file, my antivirus detected a Trojan. My girlfriend had been using it for a few days, but today it was no longer possible to put anything on without the app simply closing.

The app was speeding up her work, these manual counts are a nightmare and time consuming. I can't understand how it just stopped like that.

Comments and labels for individual points

Hi,
feature request.
If it is possible, it would be great to have an option for custom label field for every point (and optionally display it). We use ddG at our lab for rather specific purpose, and it is already great! With labels it would be even better as a count tool.
For example, class X has multiple points, with numbers or any other characteristic of choice.

Keep up the good work, we are grateful for you software :)

Feature request - Search by image name

In some use cases, I encounter issues with specific images in the post processing of the results (not related to ddg but rather to the tagging process).

In these cases I would like to be able to insert the image name in a text box (in the summary pane), a regex filter will be applied on all images names (e.g. all that fulfil the predicate filter_text like image_name) will remain in the viewer.

detection time

Would it be possible to add a column for detection time of objects on the image? It would be great to have the time in seconds each observer spends on an image, and how long it takes to detect an object.

DotDotGoose closes when filling the x field

Hi,
Thanks for developping this nice tool.
I don't know if this is the place to write this issue. I'm using the precompiled mac version (1.0.0) and when I try to fill the X field, after loading a pictures, the program is crashing.
See the system error related to this error.
Process: DotDotGoose [76992]
Path: /Applications/DotDotGoose.app/Contents/MacOS/DotDotGoose
Identifier: DotDotGoose
Version: 0.0.0 (???)
Code Type: X86-64 (Native)
Parent Process: ??? [1]
Responsible: DotDotGoose [76992]
User ID: 501

Date/Time: 2019-05-23 15:03:15.168 +0200
OS Version: Mac OS X 10.14.4 (18E226)
Report Version: 12
Anonymous UUID: 219D59C8-A133-19E2-10CB-4F46421BDB19

Sleep/Wake UUID: AD05DEE3-4125-4994-95FF-1C69083B00D3

Time Awake Since Boot: 290000 seconds
Time Since Wake: 4800 seconds

System Integrity Protection: enabled

Crashed Thread: 0 Dispatch queue: com.apple.main-thread

Exception Type: EXC_CRASH (SIGABRT)
Exception Codes: 0x0000000000000000, 0x0000000000000000
Exception Note: EXC_CORPSE_NOTIFY

Application Specific Information:
abort() called

Thread 0 Crashed:: Dispatch queue: com.apple.main-thread
0 libsystem_kernel.dylib 0x00007fff765712c6 __pthread_kill + 10
1 libsystem_pthread.dylib 0x00007fff76626bf1 pthread_kill + 284
2 libsystem_c.dylib 0x00007fff764db6a6 abort + 127
3 QtCore 0x000000010941c8a9 0x109405000 + 96425
4 QtCore 0x000000010941e08f QMessageLogger::fatal(char const*, ...) const + 213
5 QtCore.so 0x0000000109ade5fc pyqt5_err_print() + 812
6 QtCore.so 0x0000000109ae4297 PyQtSlotProxy::unislot(void**) + 103
7 QtCore.so 0x0000000109ae41fa PyQtSlotProxy::qt_metacall(QMetaObject::Call, int, void**) + 58
8 QtCore 0x00000001096147d6 QMetaObject::activate(QObject*, int, int, void**) + 2230
9 QtWidgets 0x0000000108aad7d7 QLineEdit::textEdited(QString const&) + 55
10 QtWidgets 0x0000000108aa4ab2 0x10895c000 + 1346226
11 QtCore 0x0000000109614aaa QMetaObject::activate(QObject*, int, int, void**) + 2954
12 QtWidgets 0x0000000108aaec78 QWidgetLineControl::finishChange(int, bool, bool) + 584
13 QtWidgets 0x0000000108ab42d5 QWidgetLineControl::processKeyEvent(QKeyEvent*) + 3941
14 QtWidgets 0x0000000108aa9f72 QLineEdit::keyPressEvent(QKeyEvent*) + 34
15 QtWidgets.so 0x000000010849d008 sipQLineEdit::keyPressEvent(QKeyEvent*) + 120
16 QtWidgets 0x00000001089a60ab QWidget::event(QEvent*) + 587
17 QtWidgets 0x0000000108aa92a9 QLineEdit::event(QEvent*) + 633
18 QtWidgets.so 0x000000010849c500 sipQLineEdit::event(QEvent*) + 192
19 QtWidgets 0x000000010896bd32 QApplicationPrivate::notify_helper(QObject*, QEvent*) + 306
20 QtWidgets 0x000000010896d25c QApplication::notify(QObject*, QEvent*) + 908
21 QtWidgets.so 0x000000010853b7ca sipQApplication::notify(QObject*, QEvent*) + 234
22 QtCore 0x00000001095e385f QCoreApplication::notifyInternal2(QObject*, QEvent*) + 159
23 QtWidgets 0x00000001089c4ea4 0x10895c000 + 429732
24 QtWidgets 0x000000010896bd32 QApplicationPrivate::notify_helper(QObject*, QEvent*) + 306
25 QtWidgets 0x000000010896d10d QApplication::notify(QObject*, QEvent*) + 573
26 QtWidgets.so 0x000000010853b7ca sipQApplication::notify(QObject*, QEvent*) + 234
27 QtCore 0x00000001095e385f QCoreApplication::notifyInternal2(QObject*, QEvent*) + 159
28 QtGui 0x0000000108f21c75 QGuiApplicationPrivate::processKeyEvent(QWindowSystemInterfacePrivate::KeyEvent*) + 165
29 QtGui 0x0000000108f08d4b QWindowSystemInterface::sendWindowSystemEvents(QFlagsQEventLoop::ProcessEventsFlag) + 155
30 QtGui 0x0000000108f047b0 QWindowSystemInterface::flushWindowSystemEvents(QFlagsQEventLoop::ProcessEventsFlag) + 576
31 libqcocoa.dylib 0x00000001114bf450 0x11149c000 + 144464
32 libqcocoa.dylib 0x00000001114bf618 0x11149c000 + 144920
33 com.apple.AppKit 0x00007fff477b0b9f -[NSWindow(NSEventRouting) reallySendEvent:isDelayedEvent:] + 6840
34 com.apple.AppKit 0x00007fff477aee9f -[NSWindow(NSEventRouting) sendEvent:] + 478
35 libqcocoa.dylib 0x00000001114c3c70 0x11149c000 + 162928
36 com.apple.AppKit 0x00007fff4764f101 -[NSApplication(NSEvent) sendEvent:] + 2953
37 libqcocoa.dylib 0x00000001114ca26a 0x11149c000 + 189034
38 com.apple.AppKit 0x00007fff4763cee8 -[NSApplication run] + 755
39 libqcocoa.dylib 0x00000001114c68ed 0x11149c000 + 174317
40 QtCore 0x00000001095df3b2 QEventLoop::exec(QFlagsQEventLoop::ProcessEventsFlag) + 418
41 QtCore 0x00000001095e3f72 QCoreApplication::exec() + 402
42 QtWidgets.so 0x000000010862b662 meth_QApplication_exec(_object*, _object*) + 82
43 Python 0x00000001074b6e1b _PyCFunction_FastCallDict + 491
44 Python 0x0000000107539a87 call_function + 439
45 Python 0x00000001075361f7 _PyEval_EvalFrameDefault + 27559
46 Python 0x000000010753a4ef _PyEval_EvalCodeWithName + 2447
47 Python 0x000000010752f584 PyEval_EvalCode + 100
48 DotDotGoose 0x00000001070dbfa9 0x1070da000 + 8105
49 DotDotGoose 0x00000001070dc55a 0x1070da000 + 9562
50 DotDotGoose 0x00000001070dacb4 0x1070da000 + 3252

Thread 1:
0 libsystem_kernel.dylib 0x00007fff7656e86a __psynch_cvwait + 10
1 libsystem_pthread.dylib 0x00007fff7662756e _pthread_cond_wait + 722
2 libopenblasp-r0.3.0.dev.dylib 0x000000010a6c872b blas_thread_server + 187
3 libsystem_pthread.dylib 0x00007fff766242eb _pthread_body + 126
4 libsystem_pthread.dylib 0x00007fff76627249 _pthread_start + 66
5 libsystem_pthread.dylib 0x00007fff7662340d thread_start + 13

Thread 2:
0 libsystem_kernel.dylib 0x00007fff7656e86a __psynch_cvwait + 10
1 libsystem_pthread.dylib 0x00007fff7662756e _pthread_cond_wait + 722
2 libopenblasp-r0.3.0.dev.dylib 0x000000010a6c872b blas_thread_server + 187
3 libsystem_pthread.dylib 0x00007fff766242eb _pthread_body + 126
4 libsystem_pthread.dylib 0x00007fff76627249 _pthread_start + 66
5 libsystem_pthread.dylib 0x00007fff7662340d thread_start + 13

Thread 3:
0 libsystem_kernel.dylib 0x00007fff7656e86a __psynch_cvwait + 10
1 libsystem_pthread.dylib 0x00007fff7662756e _pthread_cond_wait + 722
2 libopenblasp-r0.3.0.dev.dylib 0x000000010a6c872b blas_thread_server + 187
3 libsystem_pthread.dylib 0x00007fff766242eb _pthread_body + 126
4 libsystem_pthread.dylib 0x00007fff76627249 _pthread_start + 66
5 libsystem_pthread.dylib 0x00007fff7662340d thread_start + 13

Thread 4:: com.apple.NSEventThread
0 libsystem_kernel.dylib 0x00007fff7656b22a mach_msg_trap + 10
1 libsystem_kernel.dylib 0x00007fff7656b76c mach_msg + 60
2 com.apple.CoreFoundation 0x00007fff49fbe13e __CFRunLoopServiceMachPort + 328
3 com.apple.CoreFoundation 0x00007fff49fbd6ac __CFRunLoopRun + 1612
4 com.apple.CoreFoundation 0x00007fff49fbce0e CFRunLoopRunSpecific + 455
5 com.apple.AppKit 0x00007fff4764bd1a _NSEventThread + 175
6 libsystem_pthread.dylib 0x00007fff766242eb _pthread_body + 126
7 libsystem_pthread.dylib 0x00007fff76627249 _pthread_start + 66
8 libsystem_pthread.dylib 0x00007fff7662340d thread_start + 13

Thread 5:
0 libsystem_pthread.dylib 0x00007fff766233f0 start_wqthread + 0

Thread 6:
0 libsystem_pthread.dylib 0x00007fff766233f0 start_wqthread + 0

Thread 7:
0 libsystem_pthread.dylib 0x00007fff766233f0 start_wqthread + 0

Thread 0 crashed with X86 Thread State (64-bit):
rax: 0x0000000000000000 rbx: 0x0000000111faf5c0 rcx: 0x00007ffee8b22e48 rdx: 0x0000000000000000
rdi: 0x0000000000000307 rsi: 0x0000000000000006 rbp: 0x00007ffee8b22e80 rsp: 0x00007ffee8b22e48
r8: 0x00000000000130a8 r9: 0x00007fffa9430048 r10: 0x0000000000000000 r11: 0x0000000000000206
r12: 0x0000000000000307 r13: 0x0000000111042530 r14: 0x0000000000000006 r15: 0x000000000000002d
rip: 0x00007fff765712c6 rfl: 0x0000000000000206 cr2: 0x00007fffa942e188

Logical CPU: 0
Error Code: 0x02000148
Trap Number: 133

Binary Images:
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0x7fff762be000 - 0x7fff762c8ff3 libcommonCrypto.dylib (60118.250.2) <17C4F395-9FF0-331F-8167-5E85AA3588E9> /usr/lib/system/libcommonCrypto.dylib
0x7fff762c9000 - 0x7fff762d0ff7 libcompiler_rt.dylib (63.4) <8CB2B2B6-2C55-3733-9842-0E037AE3F46A> /usr/lib/system/libcompiler_rt.dylib
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0x7fff762db000 - 0x7fff7635ffc7 libcorecrypto.dylib (602.250.23) <3A6CBD41-AFFE-3E06-B1EC-3E95BC79BAC5> /usr/lib/system/libcorecrypto.dylib
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0x7fff76480000 - 0x7fff76507fff libsystem_c.dylib (1272.250.1) /usr/lib/system/libsystem_c.dylib
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0x7fff7660f000 - 0x7fff76616fff libsystem_notify.dylib (172.200.21) <679E9132-1A46-326E-9A11-D3FF9C86041C> /usr/lib/system/libsystem_notify.dylib
0x7fff76617000 - 0x7fff76620fef libsystem_platform.dylib (177.250.1) <3CC59141-5365-3848-94C3-D65E6FCA1E74> /usr/lib/system/libsystem_platform.dylib
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External Modification Summary:
Calls made by other processes targeting this process:
task_for_pid: 7
thread_create: 0
thread_set_state: 0
Calls made by this process:
task_for_pid: 0
thread_create: 0
thread_set_state: 0
Calls made by all processes on this machine:
task_for_pid: 308059
thread_create: 0
thread_set_state: 0

VM Region Summary:
ReadOnly portion of Libraries: Total=576.6M resident=0K(0%) swapped_out_or_unallocated=576.6M(100%)
Writable regions: Total=933.0M written=0K(0%) resident=0K(0%) swapped_out=0K(0%) unallocated=933.0M(100%)

                            VIRTUAL   REGION 

REGION TYPE SIZE COUNT (non-coalesced)
=========== ======= =======
Accelerate framework 256K 2
Activity Tracing 256K 1
CG backing stores 5588K 3
CG image 68K 11
CoreAnimation 244K 17
CoreGraphics 8K 1
CoreImage 156K 32
CoreUI image data 1128K 25
CoreUI image file 568K 7
Foundation 63.6M 9
Kernel Alloc Once 8K 1
MALLOC 368.7M 93
MALLOC guard page 32K 8
MALLOC_LARGE (reserved) 512K 3 reserved VM address space (unallocated)
MALLOC_NANO (reserved) 384.0M 1 reserved VM address space (unallocated)
Memory Tag 242 12K 1
STACK GUARD 56.0M 8
Stack 11.6M 8
VM_ALLOCATE 364K 26
VM_ALLOCATE (reserved) 96.0M 2 reserved VM address space (unallocated)
__DATA 42.7M 424
__FONT_DATA 4K 1
__LINKEDIT 238.5M 75
__TEXT 338.1M 412
__UNICODE 564K 1
mapped file 66.5M 62
shared memory 1716K 15
=========== ======= =======
TOTAL 1.6G 1249
TOTAL, minus reserved VM space 1.2G 1249

Error in Renaming Point

Dotted points one class
followed instructions to 5.2 Relabeling Points

1. Make a class active by clicking its name in the class editor.
2. Press and hold the Shift key then left-click and drag to draw a box around the point(s) you would like to relabel.
3. Once you release the mouse button the selected points will be highlighted with a red halo.
4. Press the ‘r’ key to relabel the selected points to the active class.

Got the following error: Exception Detected: ValueError
 File "ddg\canvas.py", line 482, in relabel_selected_points


Overlay export format

Overlay export saves in .PNG format, not .JPG as listed in the recent enhancements. Is this to preserve image quality? One can convert the format later according to documentation needs, though saving to .jpg w/in DDG would be a useful choice. I've been using a full sensor camera (counting sea lions and birds on coastal rocks) so the .jpg images are big to start with, and .PNG tend to be much larger files.

Feature Request: Export metadata into json format

@persts JSON format is very much needed for training deep learning models.

Translation of DotDotGoose

Hello,

I use DDG a lot and I would really like to help spread it by translating it into French. For now I just forked the repository but maybe you can set up a system like Weblate, Transifex or Crowdin?

During my translation tests, I am confronted with two problems:

• the icons are not displayed because they are not present in the repository - is it therefore possible to add them?
• when I want to export the chips I get an error:
  

Do you have any idea regarding this?

Thanks in advance! 😊

Rotating images

Hi,

Is there a way of rotating images in the app? My images revert to upside down when dragged into the app.

Or any other solution to this issue?

Feature request - visibility of count/custom fields in summary pane

Firstly, thanks for a great product, it is super useful, super simple and gets the job done.

A nice feature I'd be happy to see is in the summary pane, I'd be happy to see preview of counts/some of the field without "opening" the small arrow.

One reason for that is so when I come back for tagging purposes, I'd quickly find the spot where I finished (by seeing the count field filled). I imagine it similar to the columns in Finder/Windows file explorer, where upon right clicking you can pick which columns to preview (file size/file type/date modified etc.)

See attached image for illustration.

Thanks!

Feature Request - point overlay export

Request on behalf of Dennis Marks, U.S. Fish and Wildlife Service

Add ability to save / export a copy of the image with the points, i.e., save the image display area.

KeyError when trying to relabel points

Hi,

I'm currently testing DotDotGoose v1.6.0 on macOS and trying to relabel a bunch of points like in the video below, but I'm getting the following error:

KeyError
  File "ddg/canvas.py", line 484, in relabel_selected_points

The error window appears when I press the r key. Any idea what's going on?

KeyError.mp4

If it's helpful, here's the image and the points I'm starting with: TEST.zip

Thanks,
Ștefan

Updating points file to include new images

In some cases, I have already started counting in a folder when new data arrives (images) arrive. I have not found a way to update the interface to include those as well. Instead, I put the new images into another folder and count them separately.
It would be very useful to have a button that updates the points file in such a way to include the new images, and possibly notify if some images are missing while present in the points file.