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View Code? Open in Web Editor NEWClean interface to parse genotype files
License: MIT License
Clean interface to parse genotype files
License: MIT License
It would be useful (and efficient) to set a set of markers to "extract", so that the iter_genotypes
function would go directly to those (instead of parsing all the markers).
When using the Extractor to extract a list of variant instances, check on both strands (i.e. complement the alleles if needed).
Plink uses 23
to represent chromosome X in the bim file, but geneparse encodes it as X
. This need to be fixed, because Plink can't understand X
.
get_variants_in_region should work with Chromosome class.
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