Comments (2)
Hi there @xf78 thanks for your interest in tcr-dist! Can you clarify-- what information from the boxed image would you like? Is it the actual clones that are present in those boxed clusters whose logos are being shown? Or the CDR3 amino acid frequencies? Or the v-gene frequencies?
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Thank you for your reply@phbradley, yes, those showing logos subcluster present actual clones ,so i want each showing logos subcluster's information,especially, which TCR ids included in each showing logos subcluster,can output this information to text file,just like below(just an example):
Looking forward to your reply,thanks!
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Related Issues (20)
- Add universal newline support HOT 2
- Feature request: save PCs from kPCA to log HOT 1
- Track the clonality of out of frame CDR3s HOT 2
- Limitations in detecting out of frame TCRs HOT 3
- Single Chain parsed_seq Input Generating Blank Output File HOT 1
- Validation Data Missing Epitope Label HOT 2
- Amino Acid sequence inputs HOT 7
- How to use tcr-dist with only V gene-level information? HOT 6
- AssertionError HOT 4
- How to pair the alpha and beta chain reads from one TCR
- make_really_tall_trees.py script always running HOT 1
- make_10x_clones_file.py issue HOT 2
- Bad CPU type HOT 4
- Estimation of TCRdiv HOT 8
- setup_gammadelta_db.py issue HOT 2
- usage with mixcr files HOT 8
- Issue with run_basic_analysis
- Losing Clones
- Apply tcr-dist on amino acid sequences HOT 1
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