Hex(2) treated as an unknown modification

[pnnl-comp-mass-spec]

Hex(2) treated as an unknown modification

[FarmGeek4Life]

This appears to be a name parsing issue. I need to update the library used to output the mzid file to properly handle the names when there is punctuation. For now, you should be able to get correct output in the mzid file by using "Hex_2_" instead of "Hex(2)"

[detritus]

This also appears not to work:
<Modification location="58" monoisotopicMassDelta="324.105647"> <cvParam cvRef="MS" accession="MS:1001460" name="unknown modification" value="Hex_2_" /> </Modification>

<SearchModification fixedMod="false" massDelta="324.105652" residues="R"> <cvParam cvRef="MS" accession="MS:1001460" name="unknown modification" value="Hex_2_" /> </SearchModification>

[FarmGeek4Life]

The next release should fix this problem; also, thinking about the code I changed yesterday, using "Hex_2_" wouldn't work, because the first thing the code did was remove leading and trailing underscores... The next release will have a check for the name as an exact match, as it appears in the UniMod database.

[FarmGeek4Life]

The new Latest Release of 1.0.6510 should take care of this issue.