puolival/multipy

Multiple hypothesis testing in Python

multipy's Issues

Issue with installing from github

I encountered two errors while trying to run the setup.py script as indicated in the documentation, it seems like two python2.7 print statements were in the code:

multipy/multipy/two_group_reproducibility.py

Line 223 in eaf8486

print ind

multipy/multipy/viz.py

Line 342 in eaf8486

print np.shape(x), np.shape(y)

Installed successfully after changing them to python3 print statements. Let you know if I encounter any problems using the library.

Python 3 support: using xrange

Hi,
I can see you are using "xrange" in the fdr.py. xrange is not supported in python 3 and throws an error :)

pip installation update

Hi there! Would you mind to update the pip installation to be able to use the qvalue calculation in Python 3? Thanks

support only 2.7

Hello guys,

The import doesn't work because of print with python 2 formatting.
I am using python 3.6

Best,
T.C

Not compatible with python 3?

Your software uses xrange() instead of range(), but xrange() has been discontinued in python 3. Heres a screen shot of the error i get when trying to call your qvalues() function

I found an issue here /

File "C:\Users\shelton\AppData\Local\Programs\Python\Python36\lib\site-packages\multipy\fwer.py", line 28, in
from logger import log_fwer_analysis
ImportError: cannot import name 'log_fwer_analysis'
Here came an error:
So the first time when I ran the example
"from multipy.data import neuhaus
from multipy.fwer import sidak

pvals = neuhaus()
significant_pvals = sidak(pvals, alpha=0.05)
"it said that no module named logger
then I piped install logger
here came another error
so I don;t know how to fix it now.

Possibility to support RFT3D?

RFT 3D is commonly used in neuroscience, is it possible to support it in this package? :P