pythseq Goto Github PK
Name: pythseq
Type: User
Company: https://www.cnrs.fr/fr
Bio: IR-CNRS (Bioinformatician)
Twitter: pythseq
Location: France
Name: pythseq
Type: User
Company: https://www.cnrs.fr/fr
Bio: IR-CNRS (Bioinformatician)
Twitter: pythseq
Location: France
18.06 course at MIT
Public material for CS109
Analysis for McLaren, Willis, and Callahan (2019)
An introduction to the basics of bioinformatics for biologists. No data analysis experience necessary.
Scripts and Snakemake pipeline used in the EMBL-ABR webinar
Testing amino acid abundance estimation pipelines
sankey diagrams from charcoal output
Try 2 of detecting/removing microbial contamination from long-read assemblies.
3D de novo assembly (3D DNA) pipeline
an implementation of 3D Ken Burns Effect from a Single Image using PyTorch
GUI
500 AI Machine learning Deep learning Computer vision NLP Projects with code
Repo for counting stars and contributing. Press F to pay respect to glorious developers.
:microscope: Assemble large genomes using short reads
Reproducible container-based pipeline for the annotation of the Acanthamoeba castellanii genome
Hybrid genome assembly of Acanthamoeba castellanii. Combining long reads, Hi-C and shotgun.
Analysis of genomic changes induced in Acanthamoeba castellanii C3 following infection by Legionella pneumophila
A fast seed-embed-extend based sequence mapper and aligner
This Perl script AccNetPhylA (Accessory Constellation Network with Phylogenetic Analysis) takes up most of the analysis of AccNET (Accessory Constellation Network) (Val F. Lanza et al., 2016) by replacing the clustering tool kClust (Hauser et al., 2013) with CD-HIT (Weizhong Li et al., 2001) for analysis with nucleotide and protein sequences. "AccNET is a comparative genomic tool for accessory genome analysis using bipartite networks. The software has been designed to be compatible with most of the Network Analysis software (i.e. Cytoscape, Gephi or R)."
ACRONYM (Acronym CReatiON for You and Me)
A Compiler Writing Journey
Alternative splicing analysis of GSE132177 dataset using rMATS and plotting using rmats2sashimiplot and maser.
supplementary scripts for Adam et Kolyfetis 2021
Adapters for trimming
Advanced R programming: a book
A declarative, efficient, and flexible JavaScript library for building user interfaces.
🖖 Vue.js is a progressive, incrementally-adoptable JavaScript framework for building UI on the web.
TypeScript is a superset of JavaScript that compiles to clean JavaScript output.
An Open Source Machine Learning Framework for Everyone
The Web framework for perfectionists with deadlines.
A PHP framework for web artisans
Bring data to life with SVG, Canvas and HTML. 📊📈🎉
JavaScript (JS) is a lightweight interpreted programming language with first-class functions.
Some thing interesting about web. New door for the world.
A server is a program made to process requests and deliver data to clients.
Machine learning is a way of modeling and interpreting data that allows a piece of software to respond intelligently.
Some thing interesting about visualization, use data art
Some thing interesting about game, make everyone happy.
We are working to build community through open source technology. NB: members must have two-factor auth.
Open source projects and samples from Microsoft.
Google ❤️ Open Source for everyone.
Alibaba Open Source for everyone
Data-Driven Documents codes.
China tencent open source team.