pythseq Goto Github PK
Name: pythseq
Type: User
Company: https://www.cnrs.fr/fr
Bio: IR-CNRS (Bioinformatician)
Twitter: pythseq
Location: France
Name: pythseq
Type: User
Company: https://www.cnrs.fr/fr
Bio: IR-CNRS (Bioinformatician)
Twitter: pythseq
Location: France
Single-Cell RNA-seq pseudo-aligner
SALSA: A tool to scaffold long read assemblies with Hi-C data
Standardized and Automated MetaBarcoding Analyses workflow (Mirror)
Performs memory-efficient reservoir sampling on very large input files delimited by newlines
Plot structural variant signals from many BAMs and CRAMs
Sam's Notebook
SAMSA pipeline, version 2.0. This version supports use on a local cluster using DIAMOND for annotations.
Tools (written in C using htslib) for manipulating next-generation sequencing data
functions to analyse sanger sequencing reads in R
Systematic Analysis for Quantification of Expression
Genomic Tech's COVID sequencing
Statistical Analysis of RNA-Seq Tools
SASpector: a tool for analysis of missing regions in (bacterial) draft genomes
This project contains the code for running experiments with the DIRECT and SKETCHREFINE algorithms presented in the paper: Matteo Brucato, Juan Felipe Beltran, Azza Abouzied, Alexandra Meliou: Scalable Package Queries in Relational Database Systems. PVLDB 9(7): 576-587 (2016)
Single-Cell Analysis in Python. Scales to >1M cells.
SCARA - scaffolding with long reads
my notes for scATACseq analysis
Batch Effect Correction of RNA-seq Data through Sample Distance Matrix Adjustment
Bayesian probabilistic framework for single cell assignment to bulk DNA based subclones
Single-cell Consensus Clusters of Encoded Subspaces
Single Cell Cluster Evaluation
:sparkler: SCelVis - web-based visualization of single-cell data. :arrow_right: :arrow_right: Demo :arrow_right::arrow_right:
SCGid, a consensus approach to contig filtering and genome prediction from single-cell sequencing libraries
A parser for Google Scholar, written in Python
An open access book on scientific visualization using python and matplotlib
Introduction to Scientific Computing 🦊
Robust, flexible and resource-efficient pipelines using Go and the commandline
R package and web-tool for interactive visualisation and analysis of single cell RNA-Seq data
scMatch: a single-cell gene expression profile annotation tool using reference datasets
Pan-genome wide association studies
A declarative, efficient, and flexible JavaScript library for building user interfaces.
🖖 Vue.js is a progressive, incrementally-adoptable JavaScript framework for building UI on the web.
TypeScript is a superset of JavaScript that compiles to clean JavaScript output.
An Open Source Machine Learning Framework for Everyone
The Web framework for perfectionists with deadlines.
A PHP framework for web artisans
Bring data to life with SVG, Canvas and HTML. 📊📈🎉
JavaScript (JS) is a lightweight interpreted programming language with first-class functions.
Some thing interesting about web. New door for the world.
A server is a program made to process requests and deliver data to clients.
Machine learning is a way of modeling and interpreting data that allows a piece of software to respond intelligently.
Some thing interesting about visualization, use data art
Some thing interesting about game, make everyone happy.
We are working to build community through open source technology. NB: members must have two-factor auth.
Open source projects and samples from Microsoft.
Google ❤️ Open Source for everyone.
Alibaba Open Source for everyone
Data-Driven Documents codes.
China tencent open source team.