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microbiome_helper

A repository of bioinformatic scripts, SOPs, and tutorials for analyzing microbiome data.

microbiomeseq

An R package for microbial community analysis in an environmental context

micropipe

A pipeline for high-quality bacterial genome construction using ONT sequencing

micropipe-1

A pipeline for high-quality bacterial genome construction using ONT sequencing

micropro

A microbial profiling framework for metagenomic analysis

microwinebar

MicroWineBar is a graphical tool for analysing metagenomic sequencing samples

miller

Miller is like awk, sed, cut, join, and sort for name-indexed data such as CSV, TSV, and tabular JSON

minia

Minia is a short-read assembler based on a de Bruijn graph

minidot

Fast and pretty dotplots for whole genomes assemblies using minimap and R/ggplot2

minigraph

Proof-of-concept seq-to-graph mapper and graph generator

minimap2

A versatile pairwise aligner for genomic and spliced nucleotide sequences

minion_bacterial

Workflow and supporting files for Taylor et al: "Rapid, multiplexed, whole genome and plasmid sequencing of foodborne pathogens using long-read nanopore technology"

minion_qc

Quality control for MinION sequencing data

minipolish

A tool for Racon polishing of miniasm assemblies

minotour

Real time data analysis tools for the minION sequencing platform.

mintia

Metagenomic INsertT BIoinformatic Annotation

mir-magic

miRNA quantification from small RNA-seq

misc_scripts

mitofinder

MitoFinder: efficient automated large-scale extraction of mitogenomic data from high throughput sequencing data

mitoflex

A mitogenome toolkit inspired by MitoZ, while being more effective, precise and flexible.

mitofy

Fork of mitofy for linux web interface

mitohifi

Find, circularise and annotate mitogenome from PacBio assemblies

mitovgp

The Vertebrate Genomes Project Mitogenome Assembly Pipeline

mix

MIX: Combining multiple assemblies from NGS data

mkdocs

Project documentation with Markdown.

mmetsp

re-assembly and analysis of the Marine Microbial Eukaryotic Transcriptome Sequencing Project

mml-book.github.io

Companion webpage to the book "Mathematics For Machine Learning"

mmseqs2

MMseqs2: ultra fast and sensitive search and clustering suite

mob-suite

MOB-suite: Software tools for clustering, reconstruction and typing of plasmids from draft assemblies

moby

Moby Project - a collaborative project for the container ecosystem to assemble container-based systems