qiime2/library

QIIME 2 Library

Development Quickstart

A simple docker-compose recipe is available for development:

docker compose -f docker-compose.dev.yml up --remove-orphans --build

Production Environment Variables

• ADMINS
• ALLOWED_HOSTS
• DATABASE_URL
• RABBITMQ_URL
• CElERY_BROKER_URL
• DISCOURSE_SSO_SECRET
• DJANGO_SETTINGS_MODULE
• GOOGLE_ANALYTICS_PROPERTY_ID
• SECRET_KEY
• AWS_ACCESS_KEY_ID=YOUR_AWS_ACCESS_KEY_ID
• AWS_SECRET_ACCESS_KEY=YOUR_AWS_SECRET_ACCESS_KEY
• AWS_SES_REGION_NAME=YOUR_AWS_SES_REGION_NAME
• AWS_SES_REGION_ENDPOINT=YOUR_AWS_REGION_ENDPOINT

Misc

• openssl rand -base64 66 | tr -d '\n'

library's Issues

Using Discourse as an SSO provider

Bug Description
When using Discourse as an SSO provider, an unauthenticated user who uses the discourse OAuth service will be logged into discourse, but will not be redirected from the login back to library.

Expected behavior
The user should be redirected automatically to the library, even if they have not logged into discourse.

Comments

1. This will likely require a PR to discourse.

References

1. https://meta.discourse.org/t/sso-redirect-problem/59044

Admin plugin form requires dependencies

Bug Description
Dependencies were removed from the main site UI, but the admin site still includes them in the form, and requires them in order to save a plugin record.

Logo truncated in some environments

Bug Description
The right side of the Qiime 2 Library logo is cut off in Firefox (not in Chrome). This behavior holds at desktop and mobile screen sizes.

See screencap below.

Steps to reproduce the behavior

1. Open firefox, navigate to the library
2. Look at the logo (top left)

Expected behavior
Logo should be displayed in toto in all major browsers.

Screenshots

Computation Environment

• OS: LinuxMint 18.3 Cinnamon
• Firefox 65 "Quantum" (64-bit)

TODO: upgrade dokku && ubuntu

Probably easiest to just stand up a new server and tweak the DNS.

Plugins: require currently editing user to be on author list

Bug Description
Users creating (or editing) a plugin should be required to be in the author list --- without it, someone can create a plugin and not be able to continue editing after saving the record.

References

1. Forum