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galaxy-pcr-markers

Scripts for design of PCR-based Marker Assays from DNA sequence variant data, plus Galaxy xml files

gambit

Tool for integrative gene-based association analysis using GWAS summary stats

gapit

A basic workthrough of GAPIT for GWAS studies including comments

gapit-1

gapit3

Genome Association Predict Integrate Tools

gatk-sv

gatk4-cnn-variant-filter

This repo provides workflows that takes advantage of GATKs CNN tool

gatk4-data-processing

Workflows for processing high-throughput sequencing data for variant discovery with GATK4 and related tools

gatk4-genome-processing-pipeline

Workflows used for processing whole genome sequence data + germline variant calling.

gatk4-germline-snps-indels

Workflows for germline short variant discovery with GATK4

gatk4_best_practice

GATK4 Best Practice Nextflow Pipeline

gbastoolkit

A ToolKit to perform gene-based association studies using VEGAS or MAGMA

gbs_scabrum

post-TASSEL data and analysis

gemma

Genome-wide Efficient Mixed Model Association

generic-qc

Snakemake pipeline for fastqc.

genes_on_chr

The software can be used to draw the corresponding genes on chromosome map quickly in PDF format based on the input data. It will become a useful tool for drawing genes on chromosome map with the advantages of simple input data format, easily modified output and very good portability.

genetic-data-analysis-2

RCC workshop, "Analysis of Genetic Data 2: Mapping Genome-wide Associations."

gganatogram

Create anatograms using ggplot2

ggbeeswarm

Column scatter / beeswarm-style plots in ggplot2

ggbg

Miscellaneous Ggplot2 Extensions

ggclusternet

Microbial ecological network visualization clustering

ggcorrplot

Visualization of a correlation matrix using ggplot2

ggdecor

Improve your data visualisation with ggplot2 in 1 minute

ggdistribute

ggplot2 extension for plotting distributions

ggfocus

A 'ggplot2' extension that provides tools for automatically creating scales to focus on subgroups of the data plotted without removing secondary information.

ggforce

Accelerating ggplot2

gggenomes

A grammar of graphics for comparative genomics

gggwas

R package 📦 with ggplot2 extensions for GWAS summary statistics (still in 🚧)

ggh4x

ggplot extension: options for tailored facets, multiple colourscales and miscellaneous

gghalves

✂️ Easy half-half geoms in ggplot2