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ggman

R package to create manhattan plots using ggplot

ggnewscale

Multiple Fill, Color and Other Scales in `ggplot2`

ggpirate

pirate plots for ggplot2

ggplot2-book

ggplot2: elegant graphics for data analysis

ggpointdensity

:chart_with_upwards_trend: :bar_chart: Introduces geom_pointdensity(): A Cross Between a Scatter Plot and a 2D Density Plot.

ggpol

🌍 Parliament diagrams and more for ggplot2

ggprism

ggplot2 extension inspired by GraphPad Prism

ggsignif

Easily add significance brackets to your ggplots

ggtech

ggplot2 tech themes, scales, and geoms

ggtree

:christmas_tree:Visualization and annotation of phylogenetic trees

ggtreeextra

:lemon: Add Geom Layers On Circular Or Other Layout Tree Of “ggtree”

ggupset

Combination matrix axis for 'ggplot2' to create 'UpSet' plots

giraffe-sv-paper

gpwas

Genome-Phenome Wide Association Study

grainsizer

R package for extracting and analyzing grain sizes within R framework

grainsizetools

A Python script for estimating grain size and differential stress via piezometers

graph-genomics-review

Pangenome graphs (review article on graph-based pangenomic methods)

graph-genotyping-paper-pipelines

Variant discovery and genotyping pipelines from pangenome graphs

gridfilecreator

A tool to create tab-delimited files, with points inside a specified range. Useful SweeD and OmegaPlus

gridfree

gridss

GRIDSS: the Genomic Rearrangement IDentification Software Suite

gwa-portal

Web-app to store an display GWAS studies

gwas

The scripts I used for GWAS analysis.

gwas-1

gwas-2

Genome-wide Association Study (GWAS) Tutorial

gwas-3

gwas-4

Scripts for GWAS association and metaanalysis

gwas-gene-discovery

A pilot project to automate GWAS gene discovery steps

gwas-lecture

Lectures on Genome Wide Association Studies (GWAS) using Python, Limix and Jupyter Noteboos

gwas-pipeline

This is a general (somewhat comprehensive) description of the LNG GWAS pipeline which can be used to guide researchers on how-to run a GWAS.