rodriguez-salarichs/vecscreen_extract

Program extracts a valuable information from an output vecscreen file

vecscreen_extract version 0.1

Program extracts a valuable information from an output vecscreen file

Copyright (C) 2007 Free Software Foundation

Usage: statistic_vecscreen.x -ivf2 file.txt -bin i

-vf2 Output file obtained from the vecscreen execution when the option -f in the vecscreen program was defined as 2

-bin Intervals of histogram (defaults=0.5)

Program extracts a valuable information from an output vecscreen file The sequence regions are cataloged in weak, moderate,strong and suspect origin according to their likelihood to be a vector

Strong Match to Vector: Strong matches usually indicate that the segment originated from foreign DNA (vector, adapter, linker, or primer) that was attached to the source DNA/RNA during the cloning process.(Expect 1 random match in 1,000,000 queries of length 350 kb.)

Moderate Match to Vector: Strong matches usually indicate that the segment originated from foreign DNA (vector, adapter, linker, or primer) that was attached to the source DNA/RNA during the cloning process.(Expect 1 random match in 1,000 queries of length 350 kb.)

Weak Match to Vector: Although weak matches often occur by chance, they indicate foreign sequence whenever there is corroborating evidence of contamination.(Expect 1 random match in 40 queries of length 350 kb.)

Please refer to the INSTALL file for installation instructions