Giter Site home page Giter Site logo

Memory calculation about dragonflye HOT 3 CLOSED

lskatz avatar lskatz commented on July 28, 2024
Memory calculation

from dragonflye.

Comments (3)

rpetit3 avatar rpetit3 commented on July 28, 2024

I think with a lot of runs we could potentially estimate the amount of memory needed.

Curious, what size genome and estimated short read coverage was giving you issues?

from dragonflye.

lskatz avatar lskatz commented on July 28, 2024

Default 16G memory and then the assembly size is around 4.8M. I'm not sure what the original coverage is. Trying to rope in my colleague to get all the details :)

from dragonflye.

rpetit3 avatar rpetit3 commented on July 28, 2024

Hi @lskatz

I'm thinking I will let workflow managers and pipeline developers handle this. If you've come up with a solution for this or would like to revisit, please feel free to reopen.

Cheers,
Robert

from dragonflye.

Related Issues (20)

Recommend Projects

  • React photo React

    A declarative, efficient, and flexible JavaScript library for building user interfaces.

  • Vue.js photo Vue.js

    🖖 Vue.js is a progressive, incrementally-adoptable JavaScript framework for building UI on the web.

  • Typescript photo Typescript

    TypeScript is a superset of JavaScript that compiles to clean JavaScript output.

  • TensorFlow photo TensorFlow

    An Open Source Machine Learning Framework for Everyone

  • Django photo Django

    The Web framework for perfectionists with deadlines.

  • D3 photo D3

    Bring data to life with SVG, Canvas and HTML. 📊📈🎉

Recommend Topics

  • javascript

    JavaScript (JS) is a lightweight interpreted programming language with first-class functions.

  • web

    Some thing interesting about web. New door for the world.

  • server

    A server is a program made to process requests and deliver data to clients.

  • Machine learning

    Machine learning is a way of modeling and interpreting data that allows a piece of software to respond intelligently.

  • Game

    Some thing interesting about game, make everyone happy.

Recommend Org

  • Facebook photo Facebook

    We are working to build community through open source technology. NB: members must have two-factor auth.

  • Microsoft photo Microsoft

    Open source projects and samples from Microsoft.

  • Google photo Google

    Google ❤️ Open Source for everyone.

  • D3 photo D3

    Data-Driven Documents codes.