Comments (4)
@incoherentian I wasn't aware it acted in this way! Let me see if I can replicate, then sure we should be able to make it to where it doesn't care.
Feel free to reach out to me about the SLURM/Nextflow/Singularity
from dragonflye.
@incoherentian I finally got a chance to try this, and was unable to replicate. Have some files I might be able to test with?
from dragonflye.
Arg, sorry @rpetit3, I more recently swapped out the ancient version of trimgalore I was preprocessing short reads with for https://github.com/FelixKrueger/TrimGalore/tree/0.6.10 & haven't experienced that issue (nor several others) since. Seems pretty clear I was misinterpreting whatever the problem was in the first place. Very sorry I didn't update you on that!
I see this was from before I even had Singularity working. Singularity is also working a charm now, even the assembly container with medaka polishing after changes from the new dev build. Thanks soooo much for SO much help!
from dragonflye.
No problem! My favorite kind of fix! Glad things are running well for you now!
from dragonflye.
Related Issues (20)
- Failed to run medaka consensus. - ModelStoreTF exception <class 'NotImplementedError'> HOT 14
- Memory default HOT 5
- Memory calculation HOT 3
- Medaka v1.7.3 HOT 8
- Feature request: dragonflye 1.1.N default to flye 2.9.2? HOT 3
- mismatch between model names valid for dragonflye 1.1.0 and medaka 1.8.0 HOT 14
- medaka fails to open model file for r1041_e82_400bps_sup_g615 HOT 9
- Feature request: replicon rotation HOT 12
- flye log HOT 4
- Coverage of "0"? HOT 3
- Polypolish error HOT 6
- Citation HOT 2
- Typo HOT 1
- Citation for Nanoq in readme - suggested update HOT 1
- Polypolish error HOT 7
- Missed plasmid in reoriented.fa
- Execution error with Rasusa v1.0.0 in conda environment HOT 2
- how to check software in dragonflye?
- Can't locate FindBin.pm in @INC HOT 1
Recommend Projects
-
React
A declarative, efficient, and flexible JavaScript library for building user interfaces.
-
Vue.js
🖖 Vue.js is a progressive, incrementally-adoptable JavaScript framework for building UI on the web.
-
Typescript
TypeScript is a superset of JavaScript that compiles to clean JavaScript output.
-
TensorFlow
An Open Source Machine Learning Framework for Everyone
-
Django
The Web framework for perfectionists with deadlines.
-
Laravel
A PHP framework for web artisans
-
D3
Bring data to life with SVG, Canvas and HTML. 📊📈🎉
-
Recommend Topics
-
javascript
JavaScript (JS) is a lightweight interpreted programming language with first-class functions.
-
web
Some thing interesting about web. New door for the world.
-
server
A server is a program made to process requests and deliver data to clients.
-
Machine learning
Machine learning is a way of modeling and interpreting data that allows a piece of software to respond intelligently.
-
Visualization
Some thing interesting about visualization, use data art
-
Game
Some thing interesting about game, make everyone happy.
Recommend Org
-
Facebook
We are working to build community through open source technology. NB: members must have two-factor auth.
-
Microsoft
Open source projects and samples from Microsoft.
-
Google
Google ❤️ Open Source for everyone.
-
Alibaba
Alibaba Open Source for everyone
-
D3
Data-Driven Documents codes.
-
Tencent
China tencent open source team.
from dragonflye.