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rpetit3 avatar rpetit3 commented on July 28, 2024 1

@incoherentian I wasn't aware it acted in this way! Let me see if I can replicate, then sure we should be able to make it to where it doesn't care.

Feel free to reach out to me about the SLURM/Nextflow/Singularity

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rpetit3 avatar rpetit3 commented on July 28, 2024

@incoherentian I finally got a chance to try this, and was unable to replicate. Have some files I might be able to test with?

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incoherentian avatar incoherentian commented on July 28, 2024

Arg, sorry @rpetit3, I more recently swapped out the ancient version of trimgalore I was preprocessing short reads with for https://github.com/FelixKrueger/TrimGalore/tree/0.6.10 & haven't experienced that issue (nor several others) since. Seems pretty clear I was misinterpreting whatever the problem was in the first place. Very sorry I didn't update you on that!

I see this was from before I even had Singularity working. Singularity is also working a charm now, even the assembly container with medaka polishing after changes from the new dev build. Thanks soooo much for SO much help!

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rpetit3 avatar rpetit3 commented on July 28, 2024

No problem! My favorite kind of fix! Glad things are running well for you now!

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