ruanjue / bsalign Goto Github PK
View Code? Open in Web Editor NEWBanded Striped DNA Sequence Alignment
License: GNU General Public License v3.0
Banded Striped DNA Sequence Alignment
License: GNU General Public License v3.0
I download the repo and run make in the directory, and an awful lot of error generated, any tips to successfully compile it in macOS ?
Hello Team,
It should be easy to just use openMP to parallel among the pairs to using multiple threads right since the library itself runs each pair sequentially. I see the thread.h but it is not used?
Thanks,
Jianshu
Dear BSAlign team,
I tried both mode, overlap mode is more like a semi-global mode that ignore gaps at both ends right, so only the overlap region that matters. However, for the extend mode, only gaps at the beginning of sequence 1 are extended while gaps at the end of it were not extended. I just trimmed the first sequence for 50 bp at both ends of it to do the testing. Any reasons for that?
Thanks,
Jianshu
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