Comments (2)
Please have a look at --ctg-min-length
, --ctg-min-nodes
in wtdbg2 --help
. Since your input was 4 reads, please generate a assembly-graph image from prefix
.3.dot using dot -Tpdf -O ...
. If you have question about the dot graph, please contact me.
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Thank you for your input. Both parameters helped a lot for a few use-cases I had.
from wtdbg2.
Related Issues (20)
- I dont find wtpoa-cns script
- Enquiry about the parameter "-m" HOT 3
- Wtdbg2: Parameter -g setting problem HOT 2
- Runtime Issue with warnings HOT 5
- wtpoa-cns polishing details HOT 9
- Different contig numbers and contig length generated! HOT 1
- Died at /home/synbiolab/SoftWares/wtdbg2/wtdbg2.pl line 25. HOT 2
- No such file: assembly.events HOT 4
- No Consensus ctg.fa file created HOT 5
- Ambiguous bases HOT 1
- adjustable parameters with --load-alignments HOT 3
- Only one sample or multiple samples can be used in wtdbg2? HOT 1
- C++/ Python library HOT 1
- ".cns.fa" output HOT 1
- contigN50 too small HOT 13
- CCS data assemble far too small HOT 4
- Recomendation for AT-high and very repetitive genome
- the estimate of running time HOT 1
- Can I adjust the parameter "-l" when I use --load-alignments?
- Error message 'died at line 29' HOT 4
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