Comments (1)
Hi @koelschnj
This is not a bug, and should normally be described in each vignette.
Important: the column names of group, sample, cell type, batches and covariates should be syntactically valid (make.names)
Important: All group, sample, cell type, batch and covariate names should be syntactically valid as well (make.names)
It's not ideal either, but some of the functions used under the hood require this.
from multinichenetr.
Related Issues (20)
- Use on multiple samples but no different conditions HOT 1
- Error in dplyr::mutate() during "Combine all the information in prioritization tables" HOT 13
- inner_join issue HOT 2
- no sample_id HOT 4
- Regarding Ligand-receptor DB HOT 1
- inner_join Issue in "Intercellular regulatory network systems view" HOT 3
- supporting evidence for the regulate potential of a ligand on a target HOT 2
- Issue with abundance_expression_info, Error in `dplyr::pull()`: Caused by error: ! object 'ligand' not found HOT 1
- circos plot HOT 1
- Error when creating contrasts_oi_simplified when running multi_nichenet_analysis_combined HOT 1
- How to visualize between sample differences in a group? HOT 1
- Sample Prioritizations are there, but not getting group prioritizations HOT 2
- How can I save the high resolution plots generated from multinichenetr with R code? HOT 1
- Can't install multinichenetr on apple silicon macOS HOT 2
- How do you determine which group the results are up-regulated in? why the circolplot incoherence with heatmap? HOT 1
- Plotting the Ligand-Activity plot for a ligand of interest HOT 3
- Error in muscat::pbDS HOT 5
- perform_muscat_de_analysis errored HOT 3
- Intercellular regulatory network systems view-graph_plot errored HOT 1
- How to set "contrast_tbl" to reproduce Fig 3a HOT 2
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from multinichenetr.