R package for visualisation of expressed metabolic pathways using iPath3
ipath can be installed:
library(devtools)
devtools::install_github('betsig/ipath')
After installation, the package can be loaded into R.
library(ipath)
ipath is an in-development package for interacting with the iPath3 (https://pathways.embl.de/ipath3.cgi?map=metabolic) metabolic pathway maps.
ipath allows users to submit a data.frame of pathway ids (for list of compatible ids see: https://pathways.embl.de/help.cgi), and corresponding values for pathway colours and widths, to ipath3 for mapping. ipath then plots the mapped pathways using ggplot2.
COMING SOON.
ipath is still undergoing development and documentation. If you would like to contribute, please submit a pull request! If you have any suggestions for features, please contact Beth Signal ([email protected]).