Giter Site home page Giter Site logo

ipath's Introduction

ipath

R package for visualisation of expressed metabolic pathways using iPath3

Installation

ipath can be installed:

library(devtools)
devtools::install_github('betsig/ipath')

After installation, the package can be loaded into R.

library(ipath)

Introduction

ipath is an in-development package for interacting with the iPath3 (https://pathways.embl.de/ipath3.cgi?map=metabolic) metabolic pathway maps.

ipath allows users to submit a data.frame of pathway ids (for list of compatible ids see: https://pathways.embl.de/help.cgi), and corresponding values for pathway colours and widths, to ipath3 for mapping. ipath then plots the mapped pathways using ggplot2.

Usage

COMING SOON.

Development

ipath is still undergoing development and documentation. If you would like to contribute, please submit a pull request! If you have any suggestions for features, please contact Beth Signal ([email protected]).

Recommend Projects

  • React photo React

    A declarative, efficient, and flexible JavaScript library for building user interfaces.

  • Vue.js photo Vue.js

    🖖 Vue.js is a progressive, incrementally-adoptable JavaScript framework for building UI on the web.

  • Typescript photo Typescript

    TypeScript is a superset of JavaScript that compiles to clean JavaScript output.

  • TensorFlow photo TensorFlow

    An Open Source Machine Learning Framework for Everyone

  • Django photo Django

    The Web framework for perfectionists with deadlines.

  • D3 photo D3

    Bring data to life with SVG, Canvas and HTML. 📊📈🎉

Recommend Topics

  • javascript

    JavaScript (JS) is a lightweight interpreted programming language with first-class functions.

  • web

    Some thing interesting about web. New door for the world.

  • server

    A server is a program made to process requests and deliver data to clients.

  • Machine learning

    Machine learning is a way of modeling and interpreting data that allows a piece of software to respond intelligently.

  • Game

    Some thing interesting about game, make everyone happy.

Recommend Org

  • Facebook photo Facebook

    We are working to build community through open source technology. NB: members must have two-factor auth.

  • Microsoft photo Microsoft

    Open source projects and samples from Microsoft.

  • Google photo Google

    Google ❤️ Open Source for everyone.

  • D3 photo D3

    Data-Driven Documents codes.