Comments (4)
Hi,
Thanks for your suggestion! The key challenge with resources such like the one you mention is the terms of use and licensing agreements (e.g. pay particular attention to point 2.3 in the licencing agreement of CKB). Resources bundled with CPSR should be freely available, with an open access policy. Unfortunately, and as stated in the licensing agreement, CKB is very constrained in this regard.
thanks,
Sigve
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thanks a lot
is there any way to collect information like that not from the database?
from cpsr.
CPSR utilizes information (e.g. therapeutic germline biomarkers) from CIViC, which is somwhat similar in nature to the CKB resource. I suggest you try exploring that resource if you like.
from cpsr.
thanks a lot, there is still some difference, thanks a lot
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Related Issues (20)
- ERROR while running HOT 3
- cpsr_validate_input.py: error: argument vcf_validation: invalid int value: '/home/zdjzyx01/biosoft/cpsr/cpsr.toml' HOT 11
- Missed variant due to transcript pick? HOT 9
- cpsr_configuration_default.toml missing from PCGR data HOT 2
- Error: Problem with `mutate()` input `ACMG_PVS1_1`. HOT 4
- Error in loadNamespace(name) : there is no package called 'reactable' HOT 2
- x object 'GWAS_CITATION' not found HOT 3
- ImportError: No module named toml HOT 1
- minor typo in src/cpsr_functions.R HOT 1
- Error: `x` and `y` must share the same src HOT 5
- genes being excluded from CPSR exploratory track HOT 5
- Not able to download the data bundles (404 Error) HOT 2
- ACMG guideline updated to version 3.0. New genes were added to the secondary finding gene list. HOT 2
- Encounter the error in cpsr-report-generation() HOT 3
- Installation Instructions Only Describe Conda HOT 2
- Add sif file for running on an HPC HOT 1
- Biomarker variants not in Pathogenic/Likely Pathogenic section of report HOT 1
- adding clones IDs + child clone emerging outside parent clone HOT 2
- Feature Request - support CNV calls (and ideally SV calls) HOT 2
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