Comments (1)
Hi Aidan,
Untuitively this sounds very much like unexpected behaviour, ideally i'd like to have your test data to debug, if that's possible at all? Just for clarification, is it so that some of the biomarker variants reported are not shown among the classified variants at all (i.e. for which genes)? I believe the present version only considers ClinVar-classified variants for the biomarker mapping, since these are most confident classifications, that might be parts of the explanation, but I'd really like to understand more what's going on.
best,
Sigve
from cpsr.
Related Issues (20)
- Custom panel HOT 11
- ERROR while running HOT 3
- cpsr_validate_input.py: error: argument vcf_validation: invalid int value: '/home/zdjzyx01/biosoft/cpsr/cpsr.toml' HOT 11
- Missed variant due to transcript pick? HOT 9
- cpsr_configuration_default.toml missing from PCGR data HOT 2
- Error: Problem with `mutate()` input `ACMG_PVS1_1`. HOT 4
- Error in loadNamespace(name) : there is no package called 'reactable' HOT 2
- x object 'GWAS_CITATION' not found HOT 3
- ImportError: No module named toml HOT 1
- minor typo in src/cpsr_functions.R HOT 1
- Error: `x` and `y` must share the same src HOT 5
- genes being excluded from CPSR exploratory track HOT 5
- Not able to download the data bundles (404 Error) HOT 2
- ACMG guideline updated to version 3.0. New genes were added to the secondary finding gene list. HOT 2
- make infromation like ckb to cpsr HOT 4
- Encounter the error in cpsr-report-generation() HOT 3
- Installation Instructions Only Describe Conda HOT 2
- Add sif file for running on an HPC HOT 1
- adding clones IDs + child clone emerging outside parent clone HOT 2
Recommend Projects
-
React
A declarative, efficient, and flexible JavaScript library for building user interfaces.
-
Vue.js
🖖 Vue.js is a progressive, incrementally-adoptable JavaScript framework for building UI on the web.
-
Typescript
TypeScript is a superset of JavaScript that compiles to clean JavaScript output.
-
TensorFlow
An Open Source Machine Learning Framework for Everyone
-
Django
The Web framework for perfectionists with deadlines.
-
Laravel
A PHP framework for web artisans
-
D3
Bring data to life with SVG, Canvas and HTML. 📊📈🎉
-
Recommend Topics
-
javascript
JavaScript (JS) is a lightweight interpreted programming language with first-class functions.
-
web
Some thing interesting about web. New door for the world.
-
server
A server is a program made to process requests and deliver data to clients.
-
Machine learning
Machine learning is a way of modeling and interpreting data that allows a piece of software to respond intelligently.
-
Visualization
Some thing interesting about visualization, use data art
-
Game
Some thing interesting about game, make everyone happy.
Recommend Org
-
Facebook
We are working to build community through open source technology. NB: members must have two-factor auth.
-
Microsoft
Open source projects and samples from Microsoft.
-
Google
Google ❤️ Open Source for everyone.
-
Alibaba
Alibaba Open Source for everyone
-
D3
Data-Driven Documents codes.
-
Tencent
China tencent open source team.
from cpsr.