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Multi-platform, free open source software for visualization and image computing.

Home Page: https://www.slicer.org

License: Other

CMake 6.76% C++ 81.81% Python 10.93% C 0.13% Shell 0.08% HTML 0.25% CSS 0.01% JavaScript 0.02%

medical-imaging vtk itk python qt image-processing national-institutes-of-health medical-image-computing neuroimaging tractography

slicer's Introduction

Slicer, or 3D Slicer, is a free, open source software package for visualization and image analysis.

3D Slicer is natively designed to be available on multiple platforms, including Windows, Linux and macOS.

Build instructions for all platforms are available on the Slicer wiki:

https://slicer.readthedocs.io/en/latest/developer_guide/build_instructions/index.html

For Slicer community announcements and support, visit:

https://discourse.slicer.org

For documentation, tutorials, and more information, please see:

https://www.slicer.org

See License.txt for information on using and contributing.

slicer's People

Contributors

Stargazers

Watchers

Forkers

jcfr brainsia jamesobutler cpinter punzo sunderlandkyl hjmjohnson lassoan afshinmessiah jehoctor anonym11 voidp34r jiwenchen gregsharp lauraflores98 sjh26 surfndez rcfun luckyfish888 pieper rbramkumar dzenanz 975150313 zhangfanmark chrissmd lscoder hherhold mohamedbenz jobindjohn ccmalulu gunnups jumbojing lix321 leengit neu2018shuangzhang comedate laurentletg choetin dyzwldw adamaji fepegar ffboy thibault-pelletier yehan0223 lydonchandra a8039974 tommyteavee chhsiao1981 mkw18 pacos9527 hologuard zemogoravla rafaelpalomar adamrankin goldragoon shuoliu-ai jianguozhou3 achataigner muratmaga phuang0915 yjsyyyjszf yushuiqiang sailfish009 wepull poluxtech 2706853499 staffantackstrom bishopwolf andinet buctcn2000 zxhuo014 agporto rat-and-rojangles iact-medical-image-processing eve-lyr jhenke168 chenxiaohui-lab luxiaoqi simonoxen brentfoster mingjie0508 rebeccalisk lls-itzhakp feiyunwill mariyaaashkolnik floryst kevinmtian sankhesh chyi rayooooo hatter222 olevs msamfair alive-research hina-shah apradyut cocosungmin lllliiiiran qiulimoges sallyhjkim

slicer's Issues

camera nodes shows up in data tree

This issue was created automatically from an original Mantis Issue. Further discussion may take place here.

MGH IO causes segfault on exit

This issue was created automatically from an original Mantis Issue. Further discussion may take place here.

Make fonts resizeable or make better font-size setting based on the system resolution.

This issue was created automatically from an original Mantis Issue. Further discussion may take place here.

Importing an xml scene tutorial.xml crashes Slicer3

This issue was created automatically from an original Mantis Issue. Further discussion may take place here.

Loading in /d/bigsur/slicerdata/cavernoma/cav.xml causes a segfault.

This issue was created automatically from an original Mantis Issue. Further discussion may take place here.

Closing scene freezes 3D viewer

This issue was created automatically from an original Mantis Issue. Further discussion may take place here.

Different default views of MRML scene in Slicer2 and Slicer3

This issue was created automatically from an original Mantis Issue. Further discussion may take place here.

ModuleDescription parser crashs Slicer if the xml string doesn't start with a <executable> tag

This issue was created automatically from an original Mantis Issue. Further discussion may take place here.

crash on exit after adding fiducial

This issue was created automatically from an original Mantis Issue. Further discussion may take place here.

vtkMRMLScene::GetNextNodeByClass Segementation faults

This issue was created automatically from an original Mantis Issue. Further discussion may take place here.

Create functionality to define oblique cuts

This issue was created automatically from an original Mantis Issue. Further discussion may take place here.

/d/bigsur/slicerdata/cystoscopy/cystoscopy.xml doesn't load properly

This issue was created automatically from an original Mantis Issue. Further discussion may take place here.

Add model changes button

This issue was created automatically from an original Mantis Issue. Further discussion may take place here.

GE Signa files not supported due to ITK bugs

This issue was created automatically from an original Mantis Issue. Further discussion may take place here.

Sub-volume feature request

This issue was created automatically from an original Mantis Issue. Further discussion may take place here.

Loading /d/bigsur/slicerdata/gynnulli/gynnulli.xml crashes Slicer3

This issue was created automatically from an original Mantis Issue. Further discussion may take place here.

Moveable Windows

This issue was created automatically from an original Mantis Issue. Further discussion may take place here.

Measure performance like Models/Meter in slicer 2.x

This issue was created automatically from an original Mantis Issue. Further discussion may take place here.

Loading /d/bigsur/slicerdata/avm/avm_reg1.xml crashes Slicer3

This issue was created automatically from an original Mantis Issue. Further discussion may take place here.

Interpolate checkbox on the VolumesDisplayGUI

This issue was created automatically from an original Mantis Issue. Further discussion may take place here.

Auto-thresholding not working for avm MRML scene

This issue was created automatically from an original Mantis Issue. Further discussion may take place here.

crash when trying to load int64 or uint64 volume

This issue was created automatically from an original Mantis Issue. Further discussion may take place here.

Slicer crashes when trying to load non-image data

This issue was created automatically from an original Mantis Issue. Further discussion may take place here.

Overwriting existing model nodes with new geometry causes crashes

This issue was created automatically from an original Mantis Issue. Further discussion may take place here.

Feature request for mapping data to 3D surface

This issue was created automatically from an original Mantis Issue. Further discussion may take place here.

fg/bg threshold issue with SPL atlas

This issue was created automatically from an original Mantis Issue. Further discussion may take place here.

CommandLineModules do not clean up temporary files if the temporary files are separate header and bulk data files.

This issue was created automatically from an original Mantis Issue. Further discussion may take place here.

hitting cancel on a non-running cli crashes slicer

This issue was created automatically from an original Mantis Issue. Further discussion may take place here.

Slice number restore from MRML

This issue was created automatically from an original Mantis Issue. Further discussion may take place here.

Loading /d/bigsur/slicerdata/BronchialTree/BronchialTree.xml crashes slicer

This issue was created automatically from an original Mantis Issue. Further discussion may take place here.

Progress bar for loading MRML scenes

This issue was created automatically from an original Mantis Issue. Further discussion may take place here.

exporting floating point volumes

This issue was created automatically from an original Mantis Issue. Further discussion may take place here.

scalar display for models

This issue was created automatically from an original Mantis Issue. Further discussion may take place here.

fit view to background doesn't always work

This issue was created automatically from an original Mantis Issue. Further discussion may take place here.

Invalid temp directory under Ubuntu

This issue was created automatically from an original Mantis Issue. Further discussion may take place here.

alt-f-x crash

This issue was created automatically from an original Mantis Issue. Further discussion may take place here.

Filebrowser in CommandLineModules defaults to searching for "txt" files.

This issue was created automatically from an original Mantis Issue. Further discussion may take place here.

Clicking the full screen icon doesn't work on Linux 64

This issue was created automatically from an original Mantis Issue. Further discussion may take place here.

Clicking on folder icon to Save a MRML scene or data to a file does nothing

This issue was created automatically from an original Mantis Issue. Further discussion may take place here.

need to be able to load a list of models from model maker

This issue was created automatically from an original Mantis Issue. Further discussion may take place here.

Problem with tooltips for FG/BG

This issue was created automatically from an original Mantis Issue. Further discussion may take place here.

Start in volumes or data?

This issue was created automatically from an original Mantis Issue. Further discussion may take place here.

command line modules don't run from within debugger

This issue was created automatically from an original Mantis Issue. Further discussion may take place here.

Blank popup message box when loading tutorial.xml

This issue was created automatically from an original Mantis Issue. Further discussion may take place here.

Deleting a selected fiducial list causes unexpected behaviour

This issue was created automatically from an original Mantis Issue. Further discussion may take place here.

Node Selector for Fibers

This issue was created automatically from an original Mantis Issue. Further discussion may take place here.

Can't use third slice window at lower resolutions

This issue was created automatically from an original Mantis Issue. Further discussion may take place here.

model building fails with space in command line (temp dir)

This issue was created automatically from an original Mantis Issue. Further discussion may take place here.

Cannot read 3-D TIFF with color lookup tables

This issue was created automatically from an original Mantis Issue. Further discussion may take place here.

Keyboard shortcut for new fiducial list

This issue was created automatically from an original Mantis Issue. Further discussion may take place here.

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