Comments (3)
hm, any idea how this scales?
On Sat, Jun 4, 2016 at 6:04 PM, Felipe A. Louza [email protected]
wrote:
Hi,
maybe it would be interesting to add how to count the occurrences of each
symbol in a fasta file: sed '/^>/d;s/(.)/\1\n/g' file.fa | sort | uniq
-icBest!
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actually, a little bad.
about 10 minutes for a 200MB file in a personal computer.
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yeah, there are probably better tools to look at nucleotide distribution. may work for small files.
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Related Issues (10)
- add datamash examples
- bam to fastq one liner HOT 2
- bug in sed 's/[ \t]*$//' example
- Awk search command is not working HOT 1
- Command for listing everything that does not match a patter requires extended globing be enabled
- H
- Faster option for "Untangle a FASTQ file. If a FASTQ file has paired-end reads intermingled" HOT 3
- Add aliases from alias.sh
- PDF creation script HOT 3
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