Comments (3)
Nice script. Any way to wrap this into a one-line command?
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cat interleaved.fastq |paste - - - - - - - - | tee >(cut -f 1-4 | tr "\t" "\n" > deinterleaved.r1.fq) | cut -f 5-8 | tr "\t" "\n" > deinterleaved.r2.fq
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Thanks, added.
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Related Issues (10)
- add datamash examples
- bam to fastq one liner HOT 2
- bug in sed 's/[ \t]*$//' example
- add sed to count the occurrences of each symbol in a fasta file HOT 3
- Awk search command is not working HOT 1
- Command for listing everything that does not match a patter requires extended globing be enabled
- H
- Add aliases from alias.sh
- PDF creation script HOT 3
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