sylvinite/arteria-runfolder

A webservice used to monitor runfolders from Illumina instruments and check what state they are in (e.g. ready to process or not).

Arteria-Runfolder

A self contained (Tornado) REST service for managing runfolders.

Try it out:

Install using pip:

pip install -r requirements/dev . # possible add -e if you're in development mode.

Open up the config/app.config and specify the root directories that you want to monitor for runfolders. Then run:

runfolder-ws --port 9999 --configroot config/

This will star the runfolder service on port 9999, and the api dock will be available under localhost:9999/api. Try curl-ing to see what you can do with it:

curl localhost:9999/api

Running the tests After install you could run the integration tests to see if everything works as expected: ./runfolder_tests/run_integration_tests.py

This will by default start a local server, run the integration tests on it and then shut the server down.

Alternatively, you can run the same script against a remote server, specifying the URL and the runfolder directory: ./runfolder_tests/run_integration_tests.py http://testarteria1:10800/api/1.0 /data/testartera1/runfolders

Unit tests can be run with nosetests ./runfolder_tests/unit

Install in production One way to install this as a daemon in a production environment can be seen at https://github.com/arteria-project/arteria-provisioning