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evomeg

evoMEG: evolutionary algorithm-based Model Ensemble Generation

findr

Fast Inference of Networks from Directed Regulations

flycop

FLYCOP (FLexible sYnthetic Consortium OPtimization)

fungal_networks

fungalnetworksimulations

Simulating fungal networks

gamer

Geometry-preserving Adaptive Mesher

gencrn

genCRN: Fast enumeration of non-isomorphic chemical reaction networks

genie3

GENIE3 (GEne Network Inference with Ensemble of trees) R-package

gentrl

Generative Tensorial Reinforcement Learning (GENTRL) model

ggl

Graph Grammar Library

gniplr

A method of constructing regulatory network

goatools

Python scripts to find enrichment of GO terms

gogo

An Improved Algorithm to Measure the Semantic Similarity of Gene Ontology Terms

gposc

gprtransform

Stoichiometric representation of GPR associations (transformation method and gene-based simulation methods)

graphprot

GraphProt: modelling binding preferences of RNA-binding proteins

gro

The gro bacterial micro-colony growth specification and simulation software. For more information see the gro website, listed below.

gta_hunter

Classification of GTA Genes using Machine Learning

gwot

Global Waddington-OT

haskell-mfapipe-executable

Open source software for parallel labeling, steady state metabolic flux analysis

hematofateprediction

Code accompanying "Prospective identification of hematopoietic lineage choice by deep learning", Nature methods, in revision

hh-suite

Remote protein homology detection suite.

hiorco

Higher-Order Co-occurrence

hotpho_analysis

HotPho, a bioinformatics tool to discover spatially interacting phosphorylation sites and mutations in cancer

hotspot3d

3D hotspot mutation proximity analysis tool

hsm

Code associated with "Biophysical prediction of protein-peptide interactions and signaling networks using machine learning."

hsm-web

Website associated with the "Biophysical prediction of protein-peptide interactions and signaling networks using machine learning."

hth-dna-db

Database of HTH-DNA complexes

huri_paper

Code for the analyses in the human reference interactome paper.

ibmabslemfer

C++ and R codes for running the microbial individual-based model and plotting Figures 2 to 5