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Calculation of tumor immune dysfunction, exclusion, and TIDE scores.
Dear tiago
Thank you very much for the code, I noticed that you are calculating the dysfunction,exclusion and TIDE score by using the code dysfunction.exclusion.patient.original.signature.R. However, the signature, exclusion.signature and average.signature.exclusion files mentioned in your code, I can only get the exclusion.signature file from the TIDE website, where should I get the rest of the files or what kind of calculation should I do to get them?
Good luck!
Can you provide a copy of raw data for TIDE input ? Thanks
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