Topic: gtdb Goto Github
Some thing interesting about gtdb
Some thing interesting about gtdb
gtdb,FlexTaxD (Flexible Taxonomy Databases) - Create, add, merge different taxonomy sources (QIIME, GTDB, NCBI and more) and create metagenomic databases (kraken2, ganon and more )
Organization: foi-bioinformatics
gtdb,Web scraper to retrieve protein data catalogued by the CAZy, UniProt, NCBI, GTDB and PDB websites/databases.
User: hobnobmancer
Home Page: https://hobnobmancer.github.io/cazy_webscraper/
gtdb,ganon2 classifies genomic sequences against large sets of references efficiently, with integrated download and update of databases (refseq/genbank), taxonomic profiling (ncbi/gtdb), binning and hierarchical classification, customized reporting and more
User: pirovc
Home Page: https://pirovc.github.io/ganon/
gtdb,Python package to obtain, parse and explore biological taxonomies (GTDB, NCBI, Silva, Greengenes, OTT)
User: pirovc
Home Page: https://pirovc.github.io/multitax/
gtdb,Benchmarking various taxonomic classifiers for profiling soil metagenomic data, with scripts and tools tailored for fungal, bacterial, and archaeal genome identification.
User: roseedwin
gtdb,GTDB taxonomy taxdump files with trackable TaxIds
User: shenwei356
gtdb,Mapping NCBI Genbank accession to GTDB accession
User: shenwei356
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