treeslab/circrna_asd

Geneme-wide, integrative analysis of circular RNA dysregulation and the corresponding circular RNA-microRNA-mRNA regulatory axes in autism

circrna_asd's Issues

missing file ‘datExpr_134s.txt’ when running step1 for LME model

Dear Pro.
I’m reading your paper titled “Genome-wide integrative analysis of circular RNA dysregulation and the corresponding circular RNA-microRNA-mRNA regulatory axes in autism”. I am very interested in the method you mentioned in your paper and try to follow your research. But when I run the code in step1 for LME model . I found that the file "datExpr_134s.txt" is missing. Can you provide it for me? Thank you so much.
Best regard.

Error in is_character(x) : object 'module_DEmiRNA' not found

When running this R code in Rstudio:
Step2.1_Relation_circRNA-miRNA

it showed the error message:
Error in is_character(x) : object 'module_DEmiRNA' not found

This link is broken

This link is broken:
Users can download them from our FTP (ftp://treeslab1.genomics.sinica.edu.tw/treeslabtools/circRNA_ASD).